View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8234_low_1 (Length: 605)
Name: NF8234_low_1
Description: NF8234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8234_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 59 - 320
Target Start/End: Original strand, 42037678 - 42037940
Alignment:
| Q |
59 |
tcactcacgggttttaagagttttgttaactcttgtacttttctcttccaattttcaataatatttctttgtttgccattnnnnnnn-tacacatcagta |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42037678 |
tcactcacgggttttaagagttttgttaactcttgtacttttctcctccaattttcaataatatttctttgtttgccattaaaaaaaatacacatcagta |
42037777 |
T |
|
| Q |
158 |
ttgataatataataagcataagtatttacaatttcttaaggtgcatcatgttcatactttactannnnnnnatggcaaagataaatatattaacaaaata |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42037778 |
ttgataatataataagcataagtatttacaatttcttaaggtgcatcatgttcatactttactatttttttatggcaaagataaatatattaacaaaata |
42037877 |
T |
|
| Q |
258 |
aagaggttgtgcaagagtgctacaaaacaaacagaaaatagcagcctgagccccaggggtacc |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42037878 |
aagaggttgtgcaagagtgctacaaaacaaacagaaagtagcagcctgagccccaggggtacc |
42037940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 389 - 585
Target Start/End: Original strand, 42038009 - 42038205
Alignment:
| Q |
389 |
tcccaaaaacctgagaataacctccaaaaccagactactcgtcggaagttgcccattccctaggggaacagggagagggaccaaacctaatgggctgtcg |
488 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42038009 |
tcccaaaaacctgagaataacctacaaaaccagactacccgtcggaagttgcccattccctaggggaacagggagagggaccaaacctaatgggctgtcg |
42038108 |
T |
|
| Q |
489 |
agaattggaagacaaaccacccaagcccgctgagaccccaacacagacactcacacaagattctacggttccaactcatggctggatgtgtctccca |
585 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42038109 |
aggattggaagacaaaccacccaagcccgctgagaccccaacacagacactcacacaagattctacggttccaactcacggctggatgtgtctccca |
42038205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University