View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8234_low_10 (Length: 284)
Name: NF8234_low_10
Description: NF8234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8234_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 13244762 - 13245025
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcat |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13244762 |
ttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcat |
13244861 |
T |
|
| Q |
101 |
gaagcacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgtgatgcatgttgtgtctgtgttgttaacctttttgttg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13244862 |
gaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgtgatgcatgttgtgtctgtgttgttaacctttttgttg |
13244961 |
T |
|
| Q |
201 |
ctgtgtctgtcctagtaaaataatgttattgtcatttgtcaaattatactatttgtgttgctct |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13244962 |
ctgtgtctgtcctagtaaaataatgttattgtcatttgtcaaattatactatttgtgttgctct |
13245025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 30368349 - 30368491
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcat |
100 |
Q |
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|||||||||| |||||||||||| | ||||| |||||||||| |||| |||| |||||||||||||||||||| | || ||||| ||||| || | || |
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| T |
30368349 |
ttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccctagggcttctgttgtcctttgaat |
30368448 |
T |
|
| Q |
101 |
gaagcacggcttaaaggtcgaagtcagtaaaagatgcatttga |
143 |
Q |
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| T |
30368449 |
gaaacatggcttgaacgtcaaggttactaaaagatgcatttga |
30368491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 13094350 - 13094278
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac |
73 |
Q |
| |
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|||||||||| ||||| |||||| ||||||| ||||||||| |||| ||||||||||||||||||||||||| |
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| T |
13094350 |
ttcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaac |
13094278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 13100952 - 13100812
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcat |
100 |
Q |
| |
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|||||||||| ||||| |||||| ||||||| |||||||| |||| |||||||||||||||||||| |||| | || |||| |||| ||| ||| |
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| T |
13100952 |
ttcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacat |
13100853 |
T |
|
| Q |
101 |
gaagcacggcttaaaggtcgaagtcagtaaaagatgcattt |
141 |
Q |
| |
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||| || ||||| |||||| |||||| |||||||||||||| |
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| T |
13100852 |
gaaacatggcttgaaggtcaaagtcactaaaagatgcattt |
13100812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 13086058 - 13085911
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcat |
100 |
Q |
| |
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||||||||||||||||||||||| || |||| |||||||||| |||| | || ||||||||||| ||||||| | ||| ||||||||| | ||||| |
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| T |
13086058 |
ttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcat |
13085959 |
T |
|
| Q |
101 |
gaagcacggcttaaaggtcgaagtcagtaaaagatgcatttgatataa |
148 |
Q |
| |
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| | || || || || ||| |||| ||||||||||| ||||||||||| |
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| T |
13085958 |
ggaacatggattcaaagtcaaagttagtaaaagatgaatttgatataa |
13085911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13070417 - 13070489
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac |
73 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||| |||||||| |||| ||||||||||||||||||||||||| |
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| T |
13070417 |
ttcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac |
13070489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 13129779 - 13129707
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac |
73 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||| |||||||| |||| ||||||||||||||||||||||||| |
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| T |
13129779 |
ttcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac |
13129707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 13161472 - 13161400
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac |
73 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||| ||||||||| |||| |||||||||||||||||| |||||| |
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| T |
13161472 |
ttcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaac |
13161400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19279409 - 19279473
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcac |
65 |
Q |
| |
|
||||||||||||||||||||||| || | || ||||||||||||||| |||| |||||||||||| |
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| T |
19279409 |
ttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcac |
19279473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13271537 - 13271474
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtca |
64 |
Q |
| |
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|||||||||||||||||||||||||| | || |||||||||| |||| | |||||||||||||| |
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| T |
13271537 |
ttcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtca |
13271474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12964116 - 12964180
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcac |
65 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||||||| |||| | ||||||||||||||| |
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| T |
12964116 |
ttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcac |
12964180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 13007151 - 13007009
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcat |
100 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||| ||||||| |||||||||||||| |||||||||| |||| | || |||| |||| ||| ||| |
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| T |
13007151 |
ttcaaatgaagatggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacat |
13007052 |
T |
|
| Q |
101 |
gaagcacggcttaaaggtcgaagtcagtaaaagatgcatttga |
143 |
Q |
| |
|
||| || ||||| ||||| |||||| |||||||||||||||| |
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| T |
13007051 |
gaaacatggcttgaaggttaaagtcactaaaagatgcatttga |
13007009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 13204410 - 13204268
Alignment:
| Q |
1 |
ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcat |
100 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||| ||| |||| ||||||| | |||||||||||||||||||| | | | |||| |||| ||| ||| |
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| T |
13204410 |
ttcaaatgaagatggtcgcagctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaaccccaaagatttcttttgttcttcacat |
13204311 |
T |
|
| Q |
101 |
gaagcacggcttaaaggtcgaagtcagtaaaagatgcatttga |
143 |
Q |
| |
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||| | || |||||||| |||||| |||||||||||||||| |
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| T |
13204310 |
gaaatatggtttaaaggttaaagtcactaaaagatgcatttga |
13204268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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