View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8234_low_2 (Length: 541)
Name: NF8234_low_2
Description: NF8234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8234_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 9485027 - 9485560
Alignment:
| Q |
1 |
caatggcagactggtcacaactcccaaaagatctcctccaactaatttcctcaaaactcgacagcgaattctaccaactccgtttccgatccgtttgttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9485027 |
caatggcagactggtcacaactcccaaaagatctcctccaactaatttcctcaaaactcgacagcgaattctaccaactccgtttccgatccgtttgttc |
9485126 |
T |
|
| Q |
101 |
atcatggcgctcttccgttcccaaaaaccatcaccaccatctcactttaccttctcacctcccaactccttccgattccaacaatctccatcattccaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9485127 |
atcatggcgctcttccgttcccaaaaaccatcaccaccatctcactttaccttctcacctcccaactccttccgattccaacaatctccatcattccaaa |
9485226 |
T |
|
| Q |
201 |
tccatcactttccctctctccaaacgaaccattttccttatcacaccccccacaa------atcatcatcatcaacaaaccctgaacaacaacccttggt |
294 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
9485227 |
tccatcactttccctctttccaaacgaaccattttccttatcacaccccccacaaatcatcatcatcatcatcaacaaaccctaaacaacaacccttggt |
9485326 |
T |
|
| Q |
295 |
taatcaaaatcggtcctgactcacgtgaccgaactcgtctctggaatcctctctcacgtgacaaacaattatctattcatctcccacaagtcattaattt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9485327 |
taatcaaaatcggtcctgactcacgtgaccgaactcgtctctggaatcctctctcacgtgacaaacaattatctatttatctcccacaagtcattaattt |
9485426 |
T |
|
| Q |
395 |
caacgaacaccgtgtcattgatctgggacgtgaattcgtaatcggtaatttcaacgaatacagctcgttatatatggaaaaggttgttgttcttgacgct |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9485427 |
caacgaacaccgtgtcattgatctgggacgtgaattcgtaatcggtaatttcaacgaatacagctcgttatatatggaaaaggttattgttcttgacgct |
9485526 |
T |
|
| Q |
495 |
gacatgtggggaggtaaagagcgttgttcggttc |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
9485527 |
gacatgtggggaggtaaagagcgttgttcggttc |
9485560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 23205984 - 23205864
Alignment:
| Q |
7 |
cagactggtcacaactcccaaaagatctcctccaactaatttcctcaaaactcgacagcgaattctaccaactccgtttccgatccgtttgttcatcatg |
106 |
Q |
| |
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|||||||||| |||| ||||| |||||| | ||||| |||||| ||| |||||||||||||| ||||||||||| || || ||||||||||||||||| |
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| T |
23205984 |
cagactggtctaaacttccaaaggatctcttacaactcatttccgaaaagctcgacagcgaattataccaactccgctttcgttccgtttgttcatcatg |
23205885 |
T |
|
| Q |
107 |
gcgctcttccgttcccaaaaa |
127 |
Q |
| |
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|| ||||||| |||||||||| |
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|
| T |
23205884 |
gcactcttccattcccaaaaa |
23205864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 445
Target Start/End: Complemental strand, 13864865 - 13864746
Alignment:
| Q |
326 |
aactcgtctctggaatcctctctcacgtgacaaacaattatctattcatctcccacaagtcattaatttcaacgaacaccgtgtcattgatctgggacgt |
425 |
Q |
| |
|
||||| ||||||||| |||||||||||||| || ||| | || ||||| |||| || || ||| |||||||||||||||||||||| ||||| || || |
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|
| T |
13864865 |
aactcatctctggaaccctctctcacgtgataagcaactcactcttcatttccctcacgttattgatttcaacgaacaccgtgtcatcgatctaggttgt |
13864766 |
T |
|
| Q |
426 |
gaattcgtaatcggtaattt |
445 |
Q |
| |
|
||||| || || |||||||| |
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|
| T |
13864765 |
gaatttgtcattggtaattt |
13864746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 23205740 - 23205671
Alignment:
| Q |
287 |
cccttggttaatcaaaatcggtcctgactcacgtgaccgaactcgtctctggaatcctctctcacgtgac |
356 |
Q |
| |
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||||||||||||||||||||| || ||||||||||| ||||||||||||| | |||||||||| |||| |
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| T |
23205740 |
cccttggttaatcaaaatcggaccagactcacgtgataaaactcgtctctggtaccctctctcacttgac |
23205671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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