View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8234_low_3 (Length: 455)
Name: NF8234_low_3
Description: NF8234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8234_low_3 |
 | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0267 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 2509 - 2065
Alignment:
| Q |
1 |
ttaattttgcacttttctcacactaagagcaaaacacaactgattggtttgtgaatggcgaaacatccacaccgtaacatgatcttcaatcgctttcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2509 |
ttaattttgcacttttctcacactaagagcaaaacacaactgattggtttgtgaatggcgaaacatccacaccgtaacatgatcttcaatcgctttcaat |
2410 |
T |
|
| Q |
101 |
tgatgcgttcgggagaaattcacccaccttccaccgctgaggacataaactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2409 |
tgatgcgttcgggagaaattcacccaccttccaccgctgaggacataaactttttcactccaatacttaaatatcatgttgaatgtgttgccttgcatgt |
2310 |
T |
|
| Q |
201 |
cataaacaacgacgtctattccttctcgaacatcttcttctccttttttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2309 |
cataaacaacgacgtctattccttctcgaacatcttcttctccttttttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatct |
2210 |
T |
|
| Q |
301 |
actctgacccggttccaaatcagtagggtatagtttcttcacaaaaggcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2209 |
actctgacccggttccaaatcagtagggtatagtttcttcacaaaaggcttgcaacaaaaaagaatatcattgtttgttataccaggaatcgtcggtata |
2110 |
T |
|
| Q |
401 |
ttgatttgtggcgctggatgagcattgttgttatatgttcttctc |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2109 |
ttgatttgtggcgctggatgagcattgttgttatatgttcttctc |
2065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 3822224 - 3822668
Alignment:
| Q |
1 |
ttaattttgcacttttctcacactaagagcaaaacacaactgattggtttgtgaatggcgaaacatccacaccgtaacatgatcttcaatcgctttcaat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3822224 |
ttaagtttgcacttttctcacactaagagcaaaacacaactgattggtttgtgaatggcgaaacatccacaccgtaacatgatcttcaatcgctttcaat |
3822323 |
T |
|
| Q |
101 |
tgatgcgttcgggagaaattcacccaccttccaccgctgaggacataaactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgt |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3822324 |
tgatgcgtttgggagaaattcacccaccttccaccgctgaggacataaactttttcactccaatacttaaatatcatgttgaatgtgttgccttgcatgt |
3822423 |
T |
|
| Q |
201 |
cataaacaacgacgtctattccttctcgaacatcttcttctccttttttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3822424 |
cataaacaacgacgtctattccttctcgaacatcttcttctccttttttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatct |
3822523 |
T |
|
| Q |
301 |
actctgacccggttccaaatcagtagggtatagtttcttcacaaaaggcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3822524 |
actctgacccggttccaaatcagtagggtatagtttcttcacaaaaggcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtata |
3822623 |
T |
|
| Q |
401 |
ttgatttgtggcgctggatgagcattgttgttatatgttcttctc |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3822624 |
ttgatttgtggcgctggatgagcattgttgttatatgttcttctc |
3822668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 3826672 - 3826228
Alignment:
| Q |
1 |
ttaattttgcacttttctcacactaagagcaaaacacaactgattggtttgtgaatggcgaaacatccacaccgtaacatgatcttcaatcgctttcaat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3826672 |
ttaagtttgcacttttctcacactaagagcaaaacacaactgattggtttgtgaatggcgaaacatccacaccgtaacatgatcttcaatcgctttcaat |
3826573 |
T |
|
| Q |
101 |
tgatgcgttcgggagaaattcacccaccttccaccgctgaggacataaactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgt |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3826572 |
tgatgcgttcggtagaaattcacccaccttccaccgctgaggacataaactttttcactccaaaacttaaatatcatgttgaatgtgtttccttgcatgt |
3826473 |
T |
|
| Q |
201 |
cataaacaacgacgtctattccttctcgaacatcttcttctccttttttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3826472 |
cataaacaacgacgtctattccttctcgaacatcttcttctccttttttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatct |
3826373 |
T |
|
| Q |
301 |
actctgacccggttccaaatcagtagggtatagtttcttcacaaaaggcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3826372 |
actctgacccggttccaaatcagtagggtatagtttcttcacaaaaggcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtata |
3826273 |
T |
|
| Q |
401 |
ttgatttgtggcgctggatgagcattgttgttatatgttcttctc |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3826272 |
ttgatttgtggcgctggatgagcattgttgttatatgttcttctc |
3826228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 6 - 445
Target Start/End: Original strand, 3784502 - 3784941
Alignment:
| Q |
6 |
tttgcacttttctcacactaagagcaaaacacaactgattggtttgtgaatggcgaaacatccacaccgtaacatgatcttcaatcgctttcaattgatg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3784502 |
tttgcacttttctcacactaagagcaaaacacaactgattggtttgtgaatggcgaaacatccataccgtaacatgatcttcaatcgctttcaattgatg |
3784601 |
T |
|
| Q |
106 |
cgttcgggagaaattcacccaccttccaccgctgaggacataaactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgtcataa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3784602 |
cgttcgggagaaattcacccaccttccaccgctgaggacataaactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgtcataa |
3784701 |
T |
|
| Q |
206 |
acaacgacgtctattccttctcgaacatcttcttctccttttttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatctactct |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
3784702 |
acaacgacgtctattccttctcgaacatcttcttctccttttttcaacaagggcaagaaatacgtttccacatgattcttgttcaatagtaatctaccct |
3784801 |
T |
|
| Q |
306 |
gacccggttccaaatcagtagggtatagtttcttcacaaaaggcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3784802 |
gacccggttccaaatcagtagggtatagtttcttcacaaaaggcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgat |
3784901 |
T |
|
| Q |
406 |
ttgtggcgctggatgagcattgttgttatatgttcttctc |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3784902 |
ttgtggcgctggatgagcattgttgttatatgttcttctc |
3784941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 6 - 445
Target Start/End: Complemental strand, 3788954 - 3788515
Alignment:
| Q |
6 |
tttgcacttttctcacactaagagcaaaacacaactgattggtttgtgaatggcgaaacatccacaccgtaacatgatcttcaatcgctttcaattgatg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3788954 |
tttgcacttttctcacactaagagcaaaacacaattgattggtttgtgaatggcgaaacatccacaccgtaacatgatcttcaatcgctttcaattgatg |
3788855 |
T |
|
| Q |
106 |
cgttcgggagaaattcacccaccttccaccgctgaggacataaactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgtcataa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3788854 |
cgttcgggagaaattcacccaccttccaccgctgaggacataaactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgtcataa |
3788755 |
T |
|
| Q |
206 |
acaacgacgtctattccttctcgaacatcttcttctccttttttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatctactct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3788754 |
acaacgacgtctattccttctcgaacatcttcttctccttttttcaacaagggcaagaaatatgtttccacatgattcttgttcaatagtaatctactct |
3788655 |
T |
|
| Q |
306 |
gacccggttccaaatcagtagggtatagtttcttcacaaaaggcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3788654 |
gacccggttccaaatcagtagggtatagtttcttcacaaaaggcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgat |
3788555 |
T |
|
| Q |
406 |
ttgtggcgctggatgagcattgttgttatatgttcttctc |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3788554 |
ttgtggcgctggatgagcattgttgttatatgttcttctc |
3788515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University