View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8234_low_4 (Length: 390)

Name: NF8234_low_4
Description: NF8234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8234_low_4
NF8234_low_4
[»] chr3 (8 HSPs)
chr3 (1-381)||(22136638-22137018)
chr3 (1-381)||(21962765-21963172)
chr3 (1-238)||(18947119-18947356)
chr3 (1-107)||(21744631-21744737)
chr3 (245-291)||(18946855-18946901)
chr3 (1-64)||(50807529-50807592)
chr3 (1-64)||(50868285-50868348)
chr3 (342-378)||(18946815-18946851)
[»] chr5 (2 HSPs)
chr5 (1-75)||(39750195-39750269)
chr5 (290-323)||(29989982-29990015)
[»] chr7 (1 HSPs)
chr7 (1-94)||(19055841-19055933)
[»] chr4 (1 HSPs)
chr4 (290-323)||(46719950-46719983)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 22136638 - 22137018
Alignment:
Q  1 ttccgtttgaatcagaaattgttgccaaatcagggtagcgctgcagaagatgcatggtgatatctatgcatggaaaatttaaaaaggatataaacatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22136638 ttccgtttgaatcagaaattgttgccaaatcagggtagcgctgcagaagatgcatggtgatatctatgcatggaaaatttaaaaaggatataaacatatg 22136737  T
Q  101 agaaatattattatatgcttggtattaaagcaacaaaataattctgaagaaataaatagttacatgcataaatgtttgaaactttggatacttttgcagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22136738 agaaatattattatatgcttggtattaaagcaacaaaataattctgaagaaataaatagttacatgcataaatgtttgaaactttggatacttttgcagt 22136837  T
Q  201 ttaaacatatatcaagctgttaaaaatattgtatcatgtataatatataaggataaagctagatgtcgcgactgcctctctcacgagagcactcttatta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  22136838 ttaaacatatatcaagctgttaaaaatattgtatcatgtataatatatatggataaagctagatgtcgcgactgcctctctcacgagagcactcttattg 22136937  T
Q  301 gtcaatgttatataacattgatatacataagtgatgtccatcgagtgtatttgtagtgggaccccttttttaccttcatct 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22136938 gtcaatgttatataacattgatatacataagtgatgtccatcgagtgtatttgtagtgggaccccttttttaccttcatct 22137018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 21962765 - 21963172
Alignment:
Q  1 ttccgtttgaatcagaaattgttgccaaatcagggtagcgctgcagaagatgcatggtgatatctatgcatggaaaatttaaaaaggatataaacatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21962765 ttccgtttgaatcagaaattgttgccaaatcagggtagcgctgcagaagatgcatggtgatatctatgcatggaaaatttaaaaaggatataaacatatg 21962864  T
Q  101 agaaatattattatatgcttggtattaaagcaacaaaataattctgaagaaataaatagttacatgcataaatgtttgaaactttggatacttttgcagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21962865 agaaatattattatatgcttggtattaaagcaacaaaataattctgaagaaataaatagttacatgcataaatgtttgaaactttggatacttttgcagt 21962964  T
Q  201 ttaaacatatatcaagctgttaaaaatattgtatca-------------------tgtataatatataaggataaagctagatgtcgcgactgcctctct 281  Q
    ||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||    
T  21962965 ttaaacatatatcaagctgttaaaaatattgtatcatgaatattacatatttctctgtataatatataaggataaagctagatgtcgcgactgcctctct 21963064  T
Q  282 cacgagagcactcttattagtcaatgttatataacattgata---------tacataagtgatgtccatcgagtgtatttgtagtgggacccctttttta 372  Q
    |||||||||||||||||| |||||||||||||||||||||||         |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  21963065 cacgagagcactcttattggtcaatgttatataacattgataccttaatggtacataagtgatgtccatcgggtgtatttgtagtgggacccc-ttttta 21963163  T
Q  373 ccttcatct 381  Q
    |||||||||    
T  21963164 ccttcatct 21963172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 18947356 - 18947119
Alignment:
Q  1 ttccgtttgaatcagaaattgttgccaaatcagggtagcgctgcagaagatgcatggtgatatctatgcatggaaaatttaaaaaggatataaacatatg 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18947356 ttccgtttgaatcagaaattgttgccaaaccagggtagcgctgcagaagatgcatggtgatatctatgcatggaaaatttaaaaaggatataaacatatg 18947257  T
Q  101 agaaatattattatatgcttggtattaaagcaacaaaataattctgaagaaataaatagttacatgcataaatgtttgaaactttggatacttttgcagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  18947256 agaaatattattatatgcttggtattaaagcaacaaaataattctgaagaaataaatagttacatgcataaatgtttgaaactttggatactttagcatt 18947157  T
Q  201 ttaaacatatatcaagctgttaaaaatattgtatcatg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18947156 ttaaacatatatcaagctgttaaaaatattgtatcatg 18947119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 21744631 - 21744737
Alignment:
Q  1 ttccgtttgaatcagaaattgttgccaaatcagggtagcgctgcagaagatgcatggtgatatctatgcatggaaaatttaaaaaggatataaacatatg 100  Q
    |||| |||||||||||||| || ||||| | |||||||||||||||||||||||||||||||||| | ||||||| ||||| |||  ||| |||||||||    
T  21744631 ttccatttgaatcagaaatggtggccaagttagggtagcgctgcagaagatgcatggtgatatctgttcatggaagatttataaataataaaaacatatg 21744730  T
Q  101 agaaata 107  Q
    || ||||    
T  21744731 agcaata 21744737  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 18946901 - 18946855
Alignment:
Q  245 atataaggataaagctagatgtcgcgactgcctctctcacgagagca 291  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||    
T  18946901 atataagaataaagctagatgtcgcgacggcctctctcacgagagca 18946855  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 50807592 - 50807529
Alignment:
Q  1 ttccgtttgaatcagaaattgttgccaaatcagggtagcgctgcagaagatgcatggtgatatc 64  Q
    |||| ||||||||||||||||||||||| |  | ||||||||| ||||||| ||||||||||||    
T  50807592 ttccatttgaatcagaaattgttgccaagtttgagtagcgctgaagaagatacatggtgatatc 50807529  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 50868285 - 50868348
Alignment:
Q  1 ttccgtttgaatcagaaattgttgccaaatcagggtagcgctgcagaagatgcatggtgatatc 64  Q
    |||| ||||||||||||||||||||||| |  | ||||||||| ||||||| ||||||||||||    
T  50868285 ttccatttgaatcagaaattgttgccaagtttgagtagcgctgaagaagatacatggtgatatc 50868348  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 18946851 - 18946815
Alignment:
Q  342 cgagtgtatttgtagtgggaccccttttttaccttca 378  Q
    |||||| |||| |||||||||||||||||||||||||    
T  18946851 cgagtgcatttatagtgggaccccttttttaccttca 18946815  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 39750269 - 39750195
Alignment:
Q  1 ttccgtttgaatcagaaattgttgccaaatcagggtagcgctgcagaagatgcatggtgatatctatgcatggaa 75  Q
    |||| ||||||||||||||||||||||| | |||||||||||| ||||||| ||||||||||||| || ||||||    
T  39750269 ttccatttgaatcagaaattgttgccaagttagggtagcgctgaagaagatacatggtgatatctgtgtatggaa 39750195  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 29990015 - 29989982
Alignment:
Q  290 cactcttattagtcaatgttatataacattgata 323  Q
    |||||||||| |||||||||||||||||||||||    
T  29990015 cactcttattggtcaatgttatataacattgata 29989982  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 19055841 - 19055933
Alignment:
Q  1 ttccgtttgaatcagaaattgttgccaaatcagggtagcgctgcagaagatgcatggtgatatctatgcatggaaaatttaaaaaggatataaa 94  Q
    |||| ||||||||||||||||||||||| |  | ||||||||| ||||||| |||||||||||| ||| |||||| ||| | ||||||||||||    
T  19055841 ttccatttgaatcagaaattgttgccaagtttgagtagcgctgaagaagatacatggtgatatc-atgtatggaacattaagaaaggatataaa 19055933  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Complemental strand, 46719983 - 46719950
Alignment:
Q  290 cactcttattagtcaatgttatataacattgata 323  Q
    |||||||||| |||||||||||||||||||||||    
T  46719983 cactcttattggtcaatgttatataacattgata 46719950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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