View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8234_low_5 (Length: 375)
Name: NF8234_low_5
Description: NF8234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8234_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 39496287 - 39495932
Alignment:
| Q |
18 |
atacttgcggtacaacatgaataatctatctctatcatgcggtttaaacagactcgtaataaatttcaagacataaatttgtgtccaaacaacatttcta |
117 |
Q |
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| T |
39496287 |
atacttgcggtacaacatgaatcatctatctctatcatgcggtttaaaca-actcgtaataaatttcaagacataa-tttgtgtccaaacaacatttcta |
39496190 |
T |
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| Q |
118 |
actgtgtttatatttacgacttcaaattaggattgcattgatactttcttttcttcaatttatattgttaagagattataagaatgttaaaattaatgat |
217 |
Q |
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| T |
39496189 |
attgtgtttatatttacgacttcaaattaggaatgcattgatactttcttttcttcaatttatattgttaagagattataagaatgttgaaattaatgat |
39496090 |
T |
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| Q |
218 |
gatgattatcaccagattttaataatgcgaatgtgaaagaggaagagaacgactttcccacgctcatcatctgatattgcatccatcccaacatctataa |
317 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39496089 |
gatgattatcaccgcattttgataatgcgaatgtgaaagaggaagagaacgactttcccacgctcatcatctgatattgcatccatcccaacatctataa |
39495990 |
T |
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| Q |
318 |
aatatgttgctttcatctcctttaactctcaccatcacttctttgccaatttgcccat |
375 |
Q |
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| T |
39495989 |
aatatgttgctttcatctcctttaactctcaccatcacttctttgccaatttgcccat |
39495932 |
T |
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