View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8234_low_7 (Length: 292)
Name: NF8234_low_7
Description: NF8234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8234_low_7 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: scaffold0267 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 2476 - 2752
Alignment:
| Q |
1 |
tttttctcttagtgtttgaatagttcaaaattaaaaggtattaaatttttatgaattaatgtagtatctattttaannnnnnnnnnataagcttgtgctc |
100 |
Q |
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|||| |||||||||| ||| ||| |||||||||||||||| ||| |||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
2476 |
ttttgctcttagtgtgagaaaagtgcaaaattaaaaggtatgaaaattttatgaattaatgtagtatcaattttaattttttttttataagcttgtgctc |
2575 |
T |
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| Q |
101 |
tatgttttcaattttgatttatatgcaggatcacttataaaccattattaatcaagcaattaattacgatggagatcaaggaagattttcacaattatgt |
200 |
Q |
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| T |
2576 |
tatgttttcaattttgatttatatgcaggatcacttataaaccattattaatcaaggaattaattacgatggagatgaaggaagattttcacaattatgt |
2675 |
T |
|
| Q |
201 |
tcgagttagttttaagagtacttctttattttctgttgcagttggttattagtaacaaactcttgtagagttgataa |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2676 |
tcgagttagttttaagagtacttctttattttctgttgcagttggttattagtaacaaactcttgtagagttgataa |
2752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 3822257 - 3821983
Alignment:
| Q |
1 |
tttttctcttagtgtttgaatagttcaaaattaaaaggtattaaatttttatgaattaatgtagtatctattttaannnnnnnnnnataagcttgtgctc |
100 |
Q |
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|||| |||||||||| ||| ||| |||| ||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3822257 |
ttttgctcttagtgtgagaaaagtgcaaacttaaaaggtatgaaaattttatgaattaatgtagtatctattttaatttttttt--ataagcttgtgctc |
3822160 |
T |
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| Q |
101 |
tatgttttcaattttgatttatatgcaggatcacttataaaccattattaatcaagcaattaattacgatggagatcaaggaagattttcacaattatgt |
200 |
Q |
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| T |
3822159 |
tatgttttcaattttgatttatatgcaggatcacttataagccattattaatcaaggaattaattacgatggagatgaaggaagattttcacaattatgt |
3822060 |
T |
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| Q |
201 |
tcgagttagttttaagagtacttctttattttctgttgcagttggttattagtaacaaactcttgtagagttgataa |
277 |
Q |
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| T |
3822059 |
tcgagttagttttaagagtacttctttattttctgttgcagttggttattagtaacaaattcttgtagagttgataa |
3821983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 3788926 - 3789200
Alignment:
| Q |
1 |
tttttctcttagtgtttgaatagttcaaaattaaaaggtattaaatttttatgaattaatgtagtatctattttaannnnnnnnnnataagcttgtgctc |
100 |
Q |
| |
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|||| |||||||||| ||| ||| |||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3788926 |
ttttgctcttagtgtgagaaaagtgcaaacataaaaggtatgaaaattttatgaattaatgtagtatctattttaatttttttt--ataagcttgtgctc |
3789023 |
T |
|
| Q |
101 |
tatgttttcaattttgatttatatgcaggatcacttataaaccattattaatcaagcaattaattacgatggagatcaaggaagattttcacaattatgt |
200 |
Q |
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| T |
3789024 |
taagttttcaattttgatttatatgcaggatcacttataagccattattaatcaaggaattaattacgatggagatgaaggaagattttcacaattatgt |
3789123 |
T |
|
| Q |
201 |
tcgagttagttttaagagtacttctttattttctgttgcagttggttattagtaacaaactcttgtagagttgataa |
277 |
Q |
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| T |
3789124 |
tcgagttagttttaagagtacttctttattttctgttgcagttggttattagtaacaaattcttgtagagttgataa |
3789200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 3784530 - 3784256
Alignment:
| Q |
1 |
tttttctcttagtgtttgaatagttcaaaattaaaaggtattaaatttttatgaattaatgtagtatctattttaannnnnnnnnnataagcttgtgctc |
100 |
Q |
| |
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|||| |||||||||| ||| ||| |||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3784530 |
ttttgctcttagtgtgagaaaagtgcaaacataaaaggtatgaaaattttatgaattaatgtagtatctattttaatttttttt--ataagcttgtgctc |
3784433 |
T |
|
| Q |
101 |
tatgttttcaattttgatttatatgcaggatcacttataaaccattattaatcaagcaattaattacgatggagatcaaggaagattttcacaattatgt |
200 |
Q |
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| T |
3784432 |
taagtttttaattttgatttatatgcaggatcacttataagccattattaatcaaggaattaattacgatggagatgaaggaagattttcacaattatgt |
3784333 |
T |
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| Q |
201 |
tcgagttagttttaagagtacttctttattttctgttgcagttggttattagtaacaaactcttgtagagttgataa |
277 |
Q |
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| T |
3784332 |
tcgagttagttttaagagtacttctttattttctgttgcagttggttattagtaacaaattcttgtagagttgataa |
3784256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 3826639 - 3826922
Alignment:
| Q |
1 |
tttttctcttagtgtttgaatagttcaaaattaaaaggtattaaatttttatgaattaatgtagtat--ctattttaannnnnnnnnn-ataagcttgtg |
97 |
Q |
| |
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|||| |||||||||| ||| ||| |||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||||||||| |
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| T |
3826639 |
ttttgctcttagtgtgagaaaagtgcaaacttaaaaggtatgaaaattttatgatttaatgtagtatatctattttaattttattttatataagcttgtg |
3826738 |
T |
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| Q |
98 |
ctctatgttttcaattttgatttatatgcaggatcacttataaaccattattaatcaagc-aattaattacgatggagatcaaggaagattttcacaatt |
196 |
Q |
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| T |
3826739 |
ctctatgttttcaattttgatttatatgcaggatcacttataaaccat--ttaatcaagcaaattaattacgatggagatgaaggaagattttcacaatt |
3826836 |
T |
|
| Q |
197 |
atg-----ttcgagttagttttaagagtacttctttattttctgttgcagttggttattagtaacaaactcttgtagagttgataa |
277 |
Q |
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||| || ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
3826837 |
atgtttaatttgagttagttttaaaagtacttctttattttctgttgcaatcagttattagtaacaaactcttgtagagttgataa |
3826922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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