View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8235_high_1 (Length: 356)

Name: NF8235_high_1
Description: NF8235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8235_high_1
NF8235_high_1
[»] chr7 (1 HSPs)
chr7 (20-318)||(22276301-22276600)
[»] chr1 (3 HSPs)
chr1 (16-111)||(11038906-11039000)
chr1 (66-140)||(10682660-10682732)
chr1 (21-111)||(45982611-45982700)
[»] chr5 (1 HSPs)
chr5 (198-293)||(41486275-41486372)
[»] chr2 (2 HSPs)
chr2 (198-271)||(10850692-10850767)
chr2 (198-271)||(10878206-10878281)
[»] chr8 (1 HSPs)
chr8 (16-129)||(8234957-8235068)
[»] chr3 (1 HSPs)
chr3 (176-233)||(26150504-26150563)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 22276600 - 22276301
Alignment:
Q  20 gaagttgagtaggagataaaagataaagaaaaagctttagggaagtaaataaattttgcatgaaaatctctttgtagcttggagaaagagaacgtatttt 119  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  22276600 gaagttgagtaggagataaaagataaagaaaaagctttaatgaagtaaataaattttacatgaaaatctctttgtagcttggagaaagagaacatatttt 22276501  T
Q  120 tgcaaaataacactgacaaaaacaaaatgaatatnnnnnnn-tgtttctgaaaatgtgcactactttgttgtaggagattactataatttttctactttt 218  Q
    ||||||||||||||||| ||||||||||||||||        ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  22276500 tgcaaaataacactgactaaaacaaaatgaatataaaaaaaatgtttctaaaaatgt-cactactttgttgcaggagattactataatttttctactttt 22276402  T
Q  219 t-gcaatattaagataacttatatacttaattagataatactagtactacgaacggacgtgtaccaaaactttatatcacatacgtaatgaattcttctc 317  Q
    | |||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  22276401 ttgcaatattaagataacttatatacttaattaggtaatattagtactacgaaccgacgtgtaccggaactttatatcacatacgtaatgaattcttctc 22276302  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 11038906 - 11039000
Alignment:
Q  16 agatgaagttgagtaggagataaaagataaagaaaaagctttagggaagtaaataaattttgcatgaaaatctctttgtagcttggagaaagagaa 111  Q
    |||||||||||||||||||||||||||||||| |||| |||  | || | |||||||||||| || |||||||||||  |||||||||||||||||    
T  11038906 agatgaagttgagtaggagataaaagataaaggaaaaccttccgtgacgcaaataaattttggat-aaaatctctttaaagcttggagaaagagaa 11039000  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 10682732 - 10682660
Alignment:
Q  66 aaataaattttgcatgaaaatctctttgtagcttggagaaagagaacgtatttttgcaaaataacactgacaaaa 140  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||| |  | ||||||||||||||||| ||||    
T  10682732 aaataaattttgta-gaaaatctctttgaagcttggagaaagagaacat-gtcttgcaaaataacactgataaaa 10682660  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 45982611 - 45982700
Alignment:
Q  21 aagttgagtaggagataaaagataaagaaaaagctttagggaagtaaataaattttgcatgaaaatctctttgtagcttggagaaagagaa 111  Q
    |||||||||||||||| || ||||||  |||| |||  | |  | ||||||||||||||| |||||||||||| ||| |||||||||||||    
T  45982611 aagttgagtaggagatgaatgataaaagaaaaccttcggcggtgcaaataaattttgcat-aaaatctctttgaagcatggagaaagagaa 45982700  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 198 - 293
Target Start/End: Complemental strand, 41486372 - 41486275
Alignment:
Q  198 tactataatttttctactt-tttgcaatattaagataacttat-atacttaattagataatactagtactacgaacggacgtgtaccaaaactttata 293  Q
    |||||||||  |||||||| ||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||| ||||  |||| || |||||||    
T  41486372 tactataatccttctacttgtttgcaatattaagatagcttattatacttaattaaatagtactagtactacgaaccgacgcatacctaatctttata 41486275  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 10850767 - 10850692
Alignment:
Q  198 tactataatttttctac-tttttgcaatattaagataactta-tatacttaattagataatactagtactacgaac 271  Q
    |||||||||  |||||| ||||||||||||||||||| |||| ||||||||||||| || ||||||||||||||||    
T  10850767 tactataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattactagtactacgaac 10850692  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 10878281 - 10878206
Alignment:
Q  198 tactataatttttctac-tttttgcaatattaagataactta-tatacttaattagataatactagtactacgaac 271  Q
    |||||||||  |||||| ||||||||||||||||||| |||| ||||||||||||| || ||||||||||||||||    
T  10878281 tactataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattactagtactacgaac 10878206  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 8234957 - 8235068
Alignment:
Q  16 agatgaagttgagtaggagataaaagataaagaaaaagctttagggaagtaaataaattttgcatgaaaatctctttgtagcttggagaaagagaacgta 115  Q
    |||||| ||||||||  ||||||||||||||| ||||  |   | || | ||||||||||||||| |||||||||||| | ||||||||||||||| ||     
T  8234957 agatgaggttgagtattagataaaagataaaggaaaacatacggtgatgcaaataaattttgcat-aaaatctctttgaaacttggagaaagagaatgt- 8235054  T
Q  116 tttttgcaaaataa 129  Q
     |||||||||||||    
T  8235055 cttttgcaaaataa 8235068  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 26150504 - 26150563
Alignment:
Q  176 gcactactttgttgtaggagattactataatttttctac--tttttgcaatattaagata 233  Q
    |||||| |||||||||| ||| |||||||||| ||||||  |||||||||||||||||||    
T  26150504 gcactagtttgttgtagcagactactataattcttctactttttttgcaatattaagata 26150563  T

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