View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8235_low_3 (Length: 294)
Name: NF8235_low_3
Description: NF8235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8235_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 18100804 - 18101081
Alignment:
| Q |
1 |
agcgtttggacaatttaacgagcttatttgatgaagcctgattccacagaagcataatatggcatcacaactagcatttggtgtcggtattataatgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18100804 |
agcgtttggacaatttaacgagcttatttgatgaagcctgattccacagaagcataatatggcatcacaactagcatttggtgtcggtattataatgttc |
18100903 |
T |
|
| Q |
101 |
cggtcgcgaagcgagtcttgaagggagttaacacacttctgagaatcatccggcatcatcggaagatcgactgaattttccggtggtggaggagaaatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18100904 |
cggtcgcgaagcgagtcttgaagggagttaacacacttctgagaatcatccggcatcatcggaagatcgactgaattttcccgtggtggaggagaaatct |
18101003 |
T |
|
| Q |
201 |
ctaatgctcttcgcgcatgagccgcgaagagccaggccgtgagtacgggacaacagcggcttcgatcgaggttgtttc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18101004 |
ctaatgctcttcgcgcatgagccgcgaagagccaggccgcgagtacgggacaacagcggcttcgatcgaggttgtttc |
18101081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 37858412 - 37858689
Alignment:
| Q |
1 |
agcgtttggacaatttaacgagcttatttgatgaagcctgattccacagaagcataatatggcatcacaactagcatttggtgtcggtattataatgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37858412 |
agcgtttggacaatttaacgagcttatttgatgaagcctgattccacagaagcataatatggcatcacaactagcatttggtgtcggtattataatgttc |
37858511 |
T |
|
| Q |
101 |
cggtcgcgaagcgagtcttgaagggagttaacacacttctgagaatcatccggcatcatcggaagatcgactgaattttccggtggtggaggagaaatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37858512 |
cggtcgcgaagcgagtcttgaagggagttaacacacttctgagaatcatccggcatcatcggaagatcgactgaattttcccgtggtggaggagaaatct |
37858611 |
T |
|
| Q |
201 |
ctaatgctcttcgcgcatgagccgcgaagagccaggccgtgagtacgggacaacagcggcttcgatcgaggttgtttc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37858612 |
ctaatgctcttcgcgcatgagccgcgaagagccaggccgcgagtacgggacaacagcggcttcgatcgaggttgtttc |
37858689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University