View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8236_high_1 (Length: 571)
Name: NF8236_high_1
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 7 - 550
Target Start/End: Complemental strand, 44365421 - 44364889
Alignment:
| Q |
7 |
agaagcagagaatgtgtttgaatacgtggaggctatgatttgtatcacgtgttagtgtataatgagtttccgtgtagatctaataatctaattcccgaac |
106 |
Q |
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| T |
44365421 |
agaaccagagaatgtgtttgaatacgtggaggctatgatttgtatcacgtgttagtgtataatgagtttccgtgtagatctaataatctaattccggaac |
44365322 |
T |
|
| Q |
107 |
aaatctctttggcctggaagaagtgtaaacatcaaaaatcatacgtcacaattacaacgcctcaacaa---ttttgattgttggcttgacacgcacaaac |
203 |
Q |
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| T |
44365321 |
aaatctctttggcctagaagaagtgtaaacatcaaaaatcatacgtcacaattacaacgcctcaacaacaattttgattgttggcttgacacgcacaaac |
44365222 |
T |
|
| Q |
204 |
gtaataaacaacaacacgtatgtcttgttgttggtcaaggttataaactgaacaaaatccacactctgtgtttgatcacaataacattggacattgccga |
303 |
Q |
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| T |
44365221 |
gtaataaacaaca---cgtatgtcttgttgttggtcaaggttataaactgaacaaaatccacactctgtgtttgatcacaataacattggacattgccga |
44365125 |
T |
|
| Q |
304 |
acaaaaatattcgtgaaaacacacatacgctgcacatgaaaatattgaagccaaataggcataatcataacaacaacagaataaataaataaataaagca |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
44365124 |
acaaaaatattcgtgaaaacacacatacgctgcacatgaaaatattgaagccaaatagacataatcataacaaca-----------gaataaataaagca |
44365036 |
T |
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| Q |
404 |
ggaagaagagagaatttagagaaaccatgtaccatgtactatttaattaaccatacccatcaaaaccatgtacaaaaagttctctaagaaacataaacta |
503 |
Q |
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| T |
44365035 |
gtaagaagagagaatttagagaaaccatgtaccatgtactatttaattaaccatacccatcaaaaccatgtacaaaaagttctctaagaaacataaacta |
44364936 |
T |
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| Q |
504 |
ctcaaattgaaaggaagaaacagacagaacaaacaaagtctcactat |
550 |
Q |
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| T |
44364935 |
ctcaaattgaaaggaagaaacagacagaacaaacaaagtctcactat |
44364889 |
T |
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