View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8236_high_13 (Length: 290)
Name: NF8236_high_13
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 7383589 - 7383770
Alignment:
| Q |
1 |
taagttagtggagttgtggtctgtggtcatgacctttaaaacttcaaacaacaattatggacctaaaagtagaaaagaacaatttaattgaccaactcaa |
100 |
Q |
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| T |
7383589 |
taagttagtggagttgtggtctgtggtcatgacctttaaaacttcaaacaacaattatggacctaaaagtagaaaagaacaatttaattgaccaactcaa |
7383688 |
T |
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| Q |
101 |
aaattgggttatcatttggtcctccttgtgtgtacgccacacactagcctatgaattttcttcacaagaaacttcccgttat |
182 |
Q |
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| T |
7383689 |
aaattgggttatcatttggtcctccttgtgtgtacgccacacactagcctatgaattttcttcacaagaaacttcccgttat |
7383770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 7383806 - 7383890
Alignment:
| Q |
184 |
tttgagtttcgaatgttttatttttacttttaaaagcaaaacttttgttttgaaggttagaattatttcgaatgtttcgtccctt |
268 |
Q |
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| T |
7383806 |
tttgagtttcgaatgttttatttttacttttaaaagcaaaacttttgttttgaaggttagaattatttcgaatgtttcgtgcctt |
7383890 |
T |
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