View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8236_high_20 (Length: 217)
Name: NF8236_high_20
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 39943258 - 39943336
Alignment:
| Q |
125 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatattt |
203 |
Q |
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| T |
39943258 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatattt |
39943336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 39943148 - 39943192
Alignment:
| Q |
15 |
tggtggtaggatgatgagttagcaactttttagaaaatattgctg |
59 |
Q |
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| T |
39943148 |
tggtgataggatgatgagttagcaactttttagaaaatattgctg |
39943192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 28739690 - 28739612
Alignment:
| Q |
125 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatattt |
203 |
Q |
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| T |
28739690 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatattt |
28739612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 28749632 - 28749554
Alignment:
| Q |
125 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatattt |
203 |
Q |
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| T |
28749632 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatattt |
28749554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 28753645 - 28753567
Alignment:
| Q |
125 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatattt |
203 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28753645 |
gtacataacaggttttactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatattt |
28753567 |
T |
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