View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8236_high_4 (Length: 461)
Name: NF8236_high_4
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Complemental strand, 5159828 - 5159400
Alignment:
| Q |
20 |
acaagaaatggtgaggtttcgtgggtgagtttgtgatttgaagttaagtcgtagggaggatggaacaggagcatagatgttgccacgtaagagcatatta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159828 |
acaagaaatggtgaggtttcgtgggtgagtttgtgatttgaagttaagtcgtagggaggatggaacaggagcatagatgttgccacgtaagagcatatta |
5159729 |
T |
|
| Q |
120 |
tcttatcacaagaacaagatacctcgtcttttttatgctctctctattcttcagaatttgtagnnnnnnncccctctgtttgtgacctttgtgtagtctg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5159728 |
tcttatcacaagaacaagatacctcgtcttttttatgctctctctattcttcagaatttgtagtttttttcccctctgtttgtgacctttgtgtagtctg |
5159629 |
T |
|
| Q |
220 |
agaatgagtgatgttttttctggtttggtttgtggttgtgaaagagctgttgaggataatgtgattagtttggttggtaggtattggctatgtgctttct |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5159628 |
agaatgagtgatgttttttctggtttggtttgtggttgtgaaagagctgttgaggataatgtgattagtttggttggtagttattggctatgtgctttct |
5159529 |
T |
|
| Q |
320 |
tcttgttgggtccacaaatagccatgctttgcaa-ataaagtttagataagggaaaacataccatggagaattatcagttaaatttgacagattaaacac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159528 |
tcttgttgggtccacaaatagccatgctttgcaagataaagtttagataagggaaaacataccatggagaattatcagttaaatttgacagattaaacac |
5159429 |
T |
|
| Q |
419 |
aggagtacttcttatgtgtctctgcttct |
447 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
5159428 |
aggagtacttcttatgtgtctctggttct |
5159400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University