View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8236_high_6 (Length: 443)
Name: NF8236_high_6
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 189 - 421
Target Start/End: Complemental strand, 47986421 - 47986188
Alignment:
| Q |
189 |
catggacactgtggtatccgctaaaatattatttaaccaatatttgatcaatcaacccctnnnnnnntatttaatcaatcaaataagtcgatcatcaatg |
288 |
Q |
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| T |
47986421 |
catggacactgtagtatccgctaaaatattatttaaccaatatttgatcaatcaacccctaaaaaaatatttaatcaatcaaataagtcgatcatcaatg |
47986322 |
T |
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| Q |
289 |
taacaacaccacttaataaaaattctaaaatgtttctattctcaccatttacccg-nnnnnnngttagtcagagaaagaacattgtaagttttctgaagt |
387 |
Q |
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| T |
47986321 |
taacaacaccacttaataaaaattctaaaatgtttctattctcaccatttacccgttttttttgttagtcagagaaagaacattgtaagttttctgatgt |
47986222 |
T |
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| Q |
388 |
atgtacacagtatgcactattgggaggttttcct |
421 |
Q |
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| T |
47986221 |
atgtacatagtatgcactattgggaggttttcct |
47986188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 47986613 - 47986445
Alignment:
| Q |
1 |
ggaggtcaacctttttgtataaggttaaaatgattctattttagtgtacccttccatccatgaatagttacaatggtttcatctatcatgaatgcatttg |
100 |
Q |
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| T |
47986613 |
ggaggtcaacctttttgtataaggataaaatgattctattttagtgtacccttccatccatgaatagttacaatggtttcatctatcatgaatgcatttg |
47986514 |
T |
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| Q |
101 |
actatggactgtctgtattattcaagcacactaatctatattcattgatcataagatggacactgtcttgacc |
173 |
Q |
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| T |
47986513 |
actatgga----ctgtattattcaagcacactaatctatattcattgatcataagatggacactgtcttgacc |
47986445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 256 - 421
Target Start/End: Original strand, 35114191 - 35114357
Alignment:
| Q |
256 |
tatttaatcaatcaaataagtcgatcatcaatgtaacaacaccactta---ataaaa-attctaaaatgtttctattctcaccatttaccc-gnnnnnnn |
350 |
Q |
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| T |
35114191 |
tatttaatcaataaaatgaatcaatcatcaatgtaacaacaccacttagaaataaaaaattctaaaatgtttctattctcaccatttaccctttttgttt |
35114290 |
T |
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| Q |
351 |
gttagtcagagaaagaacattgtaagttttctgaagtatgtacacagtatgcactattgggaggttttcct |
421 |
Q |
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| T |
35114291 |
gttactcagagaaagaacattgtaagttttctgatgtatg----cagtatgcactattggaaggttttcct |
35114357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 35114125 - 35114169
Alignment:
| Q |
119 |
tattcaagcacactaatcta-tattcattgatcataagatggaca |
162 |
Q |
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| T |
35114125 |
tattcaggcacactgatctaatattcattgatcataagatggaca |
35114169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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