View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8236_low_11 (Length: 397)
Name: NF8236_low_11
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_low_11 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 6753698 - 6753321
Alignment:
| Q |
19 |
ccatttatatcgctctaaatcatcattcatttctcaatgtacgattgaagtgtaggaaacatatttttgtaaattatcatcaaaagatatgcttgtgttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6753698 |
ccatttatatcgctctaaatcatcattcatttctcaatgtatgattgaagtgtaggaaacatatttttgtaaattattatcaaaagatatgcttgtgttt |
6753599 |
T |
|
| Q |
119 |
atgcaatccacatgaaggcaatcagagtatcctgaagggaatttgttgtacattccatttgcatccaacattcaaaagttggtgggggaaaattgattct |
218 |
Q |
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| T |
6753598 |
atgcaattcacatgaaggcaattaaagtatc-tgaagggaattcgttgtacattccatttgcatccaacattcaaaagttggtgggggaaaattgatttt |
6753500 |
T |
|
| Q |
219 |
aaaggttagtgtgattacaattcacacgctttgaatttctccaagtgcaattttcatcaacatctttccaacaaaaagttctaacactaattaaagttta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753499 |
aaaggttagtgtgattacaattcacacgctttgaatttctccaagtgcaattttcatcaacatctttccaacaaaaagttctaacactaattaaagttta |
6753400 |
T |
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| Q |
319 |
aacaaacacgttttctcatatttttcgactgttaatgccgtttcctagttatggaaaattaagtattttccaattctac |
397 |
Q |
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| T |
6753399 |
aacaaacacgttttctcatactctttgactgttaatgccgtttcctagttatggaaaattaagtattttccaattctac |
6753321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 32572603 - 32572464
Alignment:
| Q |
21 |
atttatatcgctctaaatcatcattcatttctc-aatgtacgattgaagtgtaggaaacatatttttgtaaattatcatcaaaagatatg---cttgtgt |
116 |
Q |
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| T |
32572603 |
atttacatcactctaaatcattcttcatttctctaatgcatgattcaagtgtaggaaacatatttttgtaaattattatcaaaagatatgtttgttgtgt |
32572504 |
T |
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| Q |
117 |
ttatgcaatccacatgaaggcaatcagagtatcctgaagg |
156 |
Q |
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| T |
32572503 |
ttatgtaaaccacatcaaggtattcaaagtatcctgaagg |
32572464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 6762833 - 6762756
Alignment:
| Q |
304 |
actaattaaagtttaaacaaacacgttt-tctcatatttttcgactgttaatgccgtttcctagttatggaaaattaa |
380 |
Q |
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|||| |||||||| ||||||||||||| ||||||| | || |||||||||||||| |||||| | ||||||||||| |
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| T |
6762833 |
actagttaaagttgcaacaaacacgtttctctcatactcttttactgttaatgccgtgtcctagatctggaaaattaa |
6762756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 255
Target Start/End: Complemental strand, 928542 - 928363
Alignment:
| Q |
79 |
atatttttgtaaattatcatcaaaagatatgcttgt---gtttatgcaatccacatgaaggcaatcagagtatcctgaagggaatttgttgtacattcca |
175 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||| |||||| |||| | ||| |||||| ||||| ||||| ||||||| ||| |
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| T |
928542 |
atatttttgtaaattattatcaaaagatatgcttgttgtgtttatgcaaaccacatcaaggtattcaaagtatcttgaagagaattcactgtacatccca |
928443 |
T |
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| Q |
176 |
tttgcatccaacattcaaaagttggtgggggaaaattgattctaaaggttagtgtgattacaattcacacgctttgaatt |
255 |
Q |
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| T |
928442 |
tttgcatccaatatctacaagttggtgagagcgaattgactttaaaggttagtgtgatcacaattcacacgctttaaatt |
928363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 284
Target Start/End: Original strand, 33903615 - 33903877
Alignment:
| Q |
31 |
ctctaaatcatcattcatttctc-aatgtacgattgaagtgtaggaaacatatttttgtaaattatcatcaaa--agatatgcttg-tgt--ttatgcaa |
124 |
Q |
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||||||||||| |||||||||| |||| | ||||| ||||||||||||||||||||||||| ||| |||||| | ||||||||| ||| |||||||| |
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| T |
33903615 |
ctctaaatcattcttcatttctctaatgcatgattgcagtgtaggaaacatatttttgtaaactattatcaaaatatatatgcttgttgtagttatgcaa |
33903714 |
T |
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| Q |
125 |
tccacatgaagg----caa-tcagagtatcctgaagggaatttgttgtacattccatttgcatccaacattcaaaagttggtgggggaaaattgattcta |
219 |
Q |
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| T |
33903715 |
accacatcaatgtattcaattcaaaatatcctgaagagaatctattgtgcatccca-ttgcatccaatatctaaatattggcggaggcaaattgactcta |
33903813 |
T |
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| Q |
220 |
aaggttagtgtgattacaattcacacgctttgaatttctccaagtgcaattttcatcaacatctt |
284 |
Q |
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||||||||| | || |||| |||||| |||| |||||||||||||| |||||||||| ||||||| |
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| T |
33903814 |
aaggttagtttaatcacaa-tcacacactttaaatttctccaagtgtaattttcatcgacatctt |
33903877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 233
Target Start/End: Complemental strand, 22523803 - 22523596
Alignment:
| Q |
31 |
ctctaaatcatcattcatttctc-aatgtacgattgaagtgtaggaaacatatttttgtaaattatcatcaaaagatatgcttg---tgtttatgc-aat |
125 |
Q |
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||||||||||||||||||||||| ||| | ||||||| ||||||||| ||||||||||||| ||| || |||| ||||| ||| ||||||||| || |
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| T |
22523803 |
ctctaaatcatcattcatttctctaattcatgattgaaatgtaggaaatatatttttgtaaactattataaaaaaatatgattgttatgtttatgcaaac |
22523704 |
T |
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| Q |
126 |
ccacatgaaggcaatcagagtatcctgaagggaatttgttgtacattccatttgcatccaacattcaaaagttggtgggggaaaattgattctaaaggtt |
225 |
Q |
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| T |
22523703 |
ccacatcatggtatacaatgtatccttaaaagaatttgttgtacatctcatttgcatccaatatcagaaagttgatggggacgaaatgactctaaagatt |
22523604 |
T |
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| Q |
226 |
agtgtgat |
233 |
Q |
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|||||||| |
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| T |
22523603 |
agtgtgat |
22523596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 52984421 - 52984466
Alignment:
| Q |
69 |
tgtaggaaacatatttttgtaaattatcatcaaaagatatgcttgt |
114 |
Q |
| |
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|||| |||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
52984421 |
tgtatgaaacatatttttgtaaactattatcaaaagataggcttgt |
52984466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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