View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8236_low_14 (Length: 315)
Name: NF8236_low_14
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 49179334 - 49179522
Alignment:
| Q |
17 |
ataattttcatcactgggatcatgtaatggaagtgcttcagcattgccctaagattcaagttctcagaattagtaaggtttcttatgtttgtggattgtt |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49179334 |
ataactttcatcactgggatcatgtaatggaagtgcttcagcattgccctaatattcaagttctcagaattaataaggtttcttatgtttgtggattgtt |
49179433 |
T |
|
| Q |
117 |
tttgttccttctttacttcgactgtagttcacaaatcttatttttgtatatgttttgcagctgtcacccgataatattaattggaaata |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49179434 |
tttgttccttctttacttcgactgtatttcacaaatcttatttttgtatatgttttgcagctgtcacccgacaatattaattggaaata |
49179522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 49170787 - 49170633
Alignment:
| Q |
22 |
tttcatcactgggatcatgtaatggaagtgcttcagcattgccctaagattcaagttctcagaattagtaaggtttcttatgtttgtggattgtttttgt |
121 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49170787 |
tttcaccattgggatcatgtaatggaagtgcttcagcattgccccaagcttcaaattcttcttattctgaaggtttcttatgtttgtggattgtttttgt |
49170688 |
T |
|
| Q |
122 |
tccttctttacttcgactgtagttcacaaatcttatttttgtatatgttttgcag |
176 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49170687 |
tccttctttactttgactgtagttcacaaatcttatttttgtatatgttttgcag |
49170633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 49179506 - 49179556
Alignment:
| Q |
259 |
aatattaattggaaatacccaaattttgttcctgaatgcatttcatctcac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49179506 |
aatattaattggaaatacccaaattttgttcctgaatgcatttcgtctcac |
49179556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 49170611 - 49170570
Alignment:
| Q |
268 |
tggaaatacccaaattttgttcctgaatgcatttcatctcac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49170611 |
tggaaatacccaaattttgttcctgaatgcatttcatctcac |
49170570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 48589549 - 48589593
Alignment:
| Q |
204 |
tatctacctaccctccctacccctacttcatttactcatagttgg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48589549 |
tatctacctaccctccctacccctacttcatttactaatagttgg |
48589593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University