View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8236_low_15 (Length: 291)
Name: NF8236_low_15
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 6752955 - 6753233
Alignment:
| Q |
15 |
cagagaacatccaaacatgtcagtttaacatctcctatcaaactaaaaattcaacaatttggttggtaaataatatcaacaacaaaatctcctatcaaag |
114 |
Q |
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| T |
6752955 |
cagagaacatccaaacatgtcagtttaacatctcctatcaaactaaaaattcaacaatttggttggtaaataatatcaacaacaaaatctcctatcaaag |
6753054 |
T |
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| Q |
115 |
catggttggtaac--tttgctgtgacaagttgagtcctaactcaatgnnnnnnncatgtttgtaatatatgaatcttacccttcattttcatgtttataa |
212 |
Q |
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| T |
6753055 |
catggttggtaacctctcgctgtgacaag-tgagtcctaactcaatgtttttttcatgtttgtaatatatgaatcttacccttcattttcatgtttataa |
6753153 |
T |
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| Q |
213 |
cagtagcaatttctgtt-tacacttttgttttatttggaatgtttcatttttgttctgactaaaatatttcattgttcta |
291 |
Q |
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| T |
6753154 |
cagtagcaatttctgttctacactttttttttatttggaatgtttcatttttgttttgactaaaatatttcattgttcta |
6753233 |
T |
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