View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8236_low_2 (Length: 536)
Name: NF8236_low_2
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 119 - 517
Target Start/End: Original strand, 16514890 - 16515287
Alignment:
| Q |
119 |
ttactagttatattatcaaaatacatggatggctggcttctatgatattttatgctgcttatcttgactttacaacaaaagttcttgagcagccatattt |
218 |
Q |
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| T |
16514890 |
ttactagttttcatatcaaactacatgggtggctggcttctatgatattttatgctgcttatcttgactttgcaacaaaagttcttgagcagccatattt |
16514989 |
T |
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| Q |
219 |
tatgcatttctcattatttttgtatttgatgtctttagttagtttgttggataaaaaat--gcatttttccaacattgacgtccacgtttttcttaagca |
316 |
Q |
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| T |
16514990 |
tatgcacttctcatttattttgtatttgatgtctttagttagtttgttggataaaaaaaacgcatttttctaacattgac---cacgtttttcttaagca |
16515086 |
T |
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| Q |
317 |
atctcctgtatccttttaaggggtcacatgtcctnnnnnnnggtcctcaaatactgttttgttgacttccccttatttctggttgactaatgaaaacaat |
416 |
Q |
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| T |
16515087 |
atctcctgtatccttttagggggtcacatgtcctaaaaaaaggtcctcaaatactgttttgttgacttccccttatttctggttgactaatgaaaacaat |
16515186 |
T |
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| Q |
417 |
cgttggttttgtgaacagggaacagtggaagatcggttgcaacaagtgcaagccaagaaacagaagatgatatctggtgctctcactgatgatgaagttc |
516 |
Q |
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| T |
16515187 |
cgttggttttgtgaacagggaacagtggaagatcggttgcaacaagtgcaagccaagaaacagaagatgatatctggtgctctcactgatgatgaagttc |
16515286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 16514846 - 16514890
Alignment:
| Q |
115 |
tattttactagttatattatcaaaatacatggatggctggcttct |
159 |
Q |
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| T |
16514846 |
tattttactagttttcttatcaaactacatggctggctggcttct |
16514890 |
T |
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