View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8236_low_20 (Length: 250)

Name: NF8236_low_20
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8236_low_20
NF8236_low_20
[»] chr5 (2 HSPs)
chr5 (1-235)||(19199086-19199300)
chr5 (1-222)||(19202992-19203213)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 19199300 - 19199086
Alignment:
Q  1 ctacatcaagtaaatatttgttcaacagatatatttgtgtaagctatataaaaatagaactatagatgctcataattttcatcggtttacaaactttaca 100  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||              || |    |||||||||||||||||    
T  19199300 ctacatcaagtaaatatttgttcaacag--atatttgtgtaagctatataaaaataaaact--------------ttgt----ggtttacaaactttaca 19199221  T
Q  101 tgaacaattctgttagggtacaacttactggtaaggaggagaacaaagctgattttggtgccacaagggatcggaaaatacctatgcagaaaactcagtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19199220 tgaacaattctgttagggtacaacttactggtaaggaggagaacaaagctgattttggtgccacaagggatcggaaaatacctatgcagaaaactcagtc 19199121  T
Q  201 tttcaaaggtaatgtttggttacctttttcccctt 235  Q
    |||||||||||||||||||||||||||||||||||    
T  19199120 tttcaaaggtaatgtttggttacctttttcccctt 19199086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19203213 - 19202992
Alignment:
Q  1 ctacatcaagtaaatatttgttcaacagatatatttgtgtaagctatataaaaatagaactatagatgctcataattttcatcggtttacaaactttaca 100  Q
    |||||| |||||||| || |||||| |||||||||| ||||||||||| |||| |||||||| ||||||||||||| ||||| |||||||||||||||||    
T  19203213 ctacatgaagtaaattttagttcaatagatatatttttgtaagctatacaaaattagaactaaagatgctcataatattcattggtttacaaactttaca 19203114  T
Q  101 tgaacaattctgttagggtacaacttactggtaaggaggagaacaaagctgattttggtgccacaagggatcggaaaatacctatgcagaaaactcagtc 200  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||| |||||||||||| ||||||||||||| ||||| |  |||||    
T  19203113 tgaacaattttgttagggtacaacttactggtacggaggagaacaaatctgatcttggcgccacaagggataggaaaatacctatacagaagaaccagtc 19203014  T
Q  201 tttcaaaggtaatgtttggtta 222  Q
    |||||||||| || ||||||||    
T  19203013 tttcaaaggtgatatttggtta 19202992  T

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