View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8236_low_22 (Length: 233)

Name: NF8236_low_22
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8236_low_22
NF8236_low_22
[»] chr3 (10 HSPs)
chr3 (18-104)||(8260558-8260644)
chr3 (42-104)||(8350014-8350076)
chr3 (169-214)||(8260709-8260754)
chr3 (169-214)||(8265675-8265720)
chr3 (45-104)||(8258478-8258537)
chr3 (45-104)||(8265551-8265610)
chr3 (169-214)||(8258602-8258647)
chr3 (30-100)||(8334002-8334073)
chr3 (63-104)||(8352761-8352802)
chr3 (49-104)||(8252867-8252922)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 8260558 - 8260644
Alignment:
Q  18 aagaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260558 aagaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 8260644  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 8350014 - 8350076
Alignment:
Q  42 tgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 104  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  8350014 tgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataattggagctc 8350076  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 8260709 - 8260754
Alignment:
Q  169 atcataatcagaaacttgagatgatgagtctaaagaatggccaaag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8260709 atcataatcagaaacttgagatgatgagtctaaagaatggccaaag 8260754  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 8265675 - 8265720
Alignment:
Q  169 atcataatcagaaacttgagatgatgagtctaaagaatggccaaag 214  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  8265675 atcataatcagaaacttgagacgatgagtctaaagaatggccaaag 8265720  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 8258478 - 8258537
Alignment:
Q  45 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 104  Q
    |||||||||||||||||||||||||||||  |||||||| | | ||||||||||||||||    
T  8258478 atgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctc 8258537  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 8265551 - 8265610
Alignment:
Q  45 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 104  Q
    ||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||||||||    
T  8265551 atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctc 8265610  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 8258602 - 8258647
Alignment:
Q  169 atcataatcagaaacttgagatgatgagtctaaagaatggccaaag 214  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||    
T  8258602 atcataatcagaaacttgagatgatgagtttgaagaatggccaaag 8258647  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 8334002 - 8334073
Alignment:
Q  30 gcagattaatactgcatgactacaaacgtgagag-ataagagttaacagggaaataagaaactacaattgga 100  Q
    |||||||||||| || ||||||||| |||||| | |||| |||||||  |||||||||||||||||||||||    
T  8334002 gcagattaataccgcctgactacaagcgtgaggggataatagttaacgaggaaataagaaactacaattgga 8334073  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 8352761 - 8352802
Alignment:
Q  63 gataagagttaacagggaaataagaaactacaattggagctc 104  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  8352761 gataatagttaacagggaaataagaaactacaattgaagctc 8352802  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 8252867 - 8252922
Alignment:
Q  49 ctacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 104  Q
    |||||| ||||||||| ||  |||||||| ||||||||||||| ||||||||||||    
T  8252867 ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctc 8252922  T

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