View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8236_low_24 (Length: 218)
Name: NF8236_low_24
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 42571179 - 42571382
Alignment:
| Q |
1 |
aagtgcattttcttgggttattcatcctcccgtaagtactcctcttaggaaaactgctcctactactcatatatcagatactctgaatgaagagaacact |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42571179 |
aagtgcattttcttgggttattcttcctcccgtaagtactcctcttaggaaaactgctcctgctactcatatatcagatactctgaatgaagagaacact |
42571278 |
T |
|
| Q |
101 |
atttattaatcaaaagcatctcaaatattacaaagccaaacaccgaaccaacctatcattgctccaataactcctgaaatagcaaataacaatactagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42571279 |
atttattaatcaaaagcatctcaaatattacaaagccaaacacccaaccaacctatcattgctccaataactcctgaaatagcaaataacaatactagat |
42571378 |
T |
|
| Q |
201 |
aatg |
204 |
Q |
| |
|
|||| |
|
|
| T |
42571379 |
aatg |
42571382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 42574824 - 42574952
Alignment:
| Q |
1 |
aagtgcattttcttgggttattcatcctcccgtaagtactcctcttaggaaaactgctcctactactcatatatcagatactc--tgaatgaagagaaca |
98 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
42574824 |
aagtgcattttcttgggttgttcatcctcccataagtactcctcttgggaaaattgctcctgctactcatatatcagatactctatgaaagaagaaaaca |
42574923 |
T |
|
| Q |
99 |
ctatttattaatcaaaagcatctcaaata |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42574924 |
ctatttattaatcaaaagcatctcaaata |
42574952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 42578542 - 42578640
Alignment:
| Q |
33 |
taagtactcctcttaggaaaactgctcctactactcatatatcagatac--tctgaatgaagagaacactatttattaat---caaaagcatctcaaat |
126 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||| |||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
42578542 |
taagtactcctcttagaaaaattgctcctgttactcctatatcagatactttatgaatgaagaaaacactatttattaatcaacaaaagcatctcaaat |
42578640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 42609373 - 42609426
Alignment:
| Q |
79 |
tactctgaatgaagagaacactatttattaatcaaaagcatctcaaatattaca |
132 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
42609373 |
tactctgaatgaagaaaacgttatttattaatcaaaagcacctcacatattaca |
42609426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 42578745 - 42578777
Alignment:
| Q |
172 |
tcctgaaatagcaaataacaatactagataatg |
204 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
42578745 |
tcctgaattagcaaataacaatactagataatg |
42578777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 27868899 - 27868830
Alignment:
| Q |
63 |
ctactcatatatcagatactctgaatgaagagaacactatttattaatcaaaagcatctcaaatattaca |
132 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27868899 |
ctactcatattccagatactcgaaatgaagcaaacattatttattaatcaaaagcatctcaaatattaca |
27868830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 1085259 - 1085332
Alignment:
| Q |
59 |
cctactactcatatatcagatactctgaatgaagagaacactatttattaatcaaaagcatctcaaatattaca |
132 |
Q |
| |
|
|||||||||||||| |||||| || |||||| | |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1085259 |
cctactactcatattccagatattccgaatgatgcaaacattatttattaatcaaaagcatctcaaatattaca |
1085332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University