View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8236_low_27 (Length: 210)

Name: NF8236_low_27
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8236_low_27
NF8236_low_27
[»] chr2 (2 HSPs)
chr2 (121-180)||(41378355-41378414)
chr2 (27-68)||(41378263-41378304)
[»] chr8 (1 HSPs)
chr8 (120-179)||(25829424-25829483)
[»] chr5 (1 HSPs)
chr5 (120-179)||(23173132-23173191)
[»] chr7 (3 HSPs)
chr7 (120-181)||(33320617-33320678)
chr7 (120-182)||(30655758-30655819)
chr7 (133-182)||(49036025-49036073)
[»] chr1 (1 HSPs)
chr1 (134-183)||(30465186-30465234)


Alignment Details
Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 41378355 - 41378414
Alignment:
Q  121 agtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacca 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  41378355 agtaatgacgcaagcatatacctaagacataaccacaagcataccattgcgtcaacacca 41378414  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 41378263 - 41378304
Alignment:
Q  27 aaaaatacaaaggggaaatcggttgctacacaaactccggct 68  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  41378263 aaaaatacaaaggggaaatcggttgccacacaaactccggct 41378304  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 25829424 - 25829483
Alignment:
Q  120 gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacc 179  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||    
T  25829424 gagtaatgacgcaagcatatacttatgacacaaccacaagcatacccctgcttcaacacc 25829483  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 23173132 - 23173191
Alignment:
Q  120 gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacc 179  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||    
T  23173132 gagtaatgacgcaagcatatacttatgacacaaccacaagcatacccctgcttcaacacc 23173191  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 33320678 - 33320617
Alignment:
Q  120 gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacaccaa 181  Q
    |||||||||||||| |||||||| | ||| |||||||||| ||| |||||||||||||||||    
T  33320678 gagtaatgacgcaaacatataccaatgacttaaccacaagaatagccctgcgtcaacaccaa 33320617  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 30655758 - 30655819
Alignment:
Q  120 gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacaccaaa 182  Q
    ||||||||||||  ||||||||  | |||| | ||||||||||||||||||||||||||||||    
T  30655758 gagtaatgacgccggcatatacaaatgaca-atccacaagcatacccctgcgtcaacaccaaa 30655819  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 49036025 - 49036073
Alignment:
Q  133 agcatatacctaagacataaccacaagcatacccctgcgtcaacaccaaa 182  Q
    ||||||||| || |||| ||||||| ||||||||||||||||||||||||    
T  49036025 agcatatacatatgaca-aaccacatgcatacccctgcgtcaacaccaaa 49036073  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 30465186 - 30465234
Alignment:
Q  134 gcatatacctaagacataaccacaagcatacccctgcgtcaacaccaaac 183  Q
    ||||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  30465186 gcatatacctatgaca-aaccacaagcatacccttgcgtcaccaccaaac 30465234  T

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