View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8236_low_3 (Length: 524)
Name: NF8236_low_3
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 268 - 483
Target Start/End: Original strand, 16514569 - 16514785
Alignment:
| Q |
268 |
tgatgtggaactacagttttcttagttttttgtaatgaaaatgtaggatccatggtggaatcctgcagttgaggagcaagcaataatgaggattcatcgt |
367 |
Q |
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| T |
16514569 |
tgatgtgggactacaattttctgagtttt-tgtaatgaaaatgtaggatccatggtggaatcctgcagttgaggagcaagcaataatgaggattcatcgt |
16514667 |
T |
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| Q |
368 |
attggacaaaagcgaagggttactgtaagaagattcatcgtgaaggttggctaattcatattcccaacttccctagaactat--tagctcatgcaataac |
465 |
Q |
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| T |
16514668 |
attgggcaaaagcgaagggttactgtaagaagattcattgtgaaggttagctaattcatttgctcatcttccctataactattatagctcatgcaataat |
16514767 |
T |
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| Q |
466 |
cctattcaccttgacatg |
483 |
Q |
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| T |
16514768 |
cctattcaccttcacatg |
16514785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 16514305 - 16514405
Alignment:
| Q |
11 |
agcagagagaaaaagttctgaaagaatttaacgaaacaaaagagaaaagggtaagtaaaatcaagttgaactgtatcattttcaatgaactttagcacaa |
110 |
Q |
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| T |
16514305 |
agcagagagaaaaagttctgaaagaatttaacgaaacaaaagagaaaagggtaagtaaaatcaagttgaactgtatcattttcaatgaactttagcacaa |
16514404 |
T |
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| Q |
111 |
c |
111 |
Q |
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| T |
16514405 |
c |
16514405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 16514456 - 16514529
Alignment:
| Q |
162 |
ttgatgtcactaaaagctggtggtgttggcttgaacttgacagcagcctcaaatgttttcctaatggtatgtat |
235 |
Q |
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| T |
16514456 |
ttgatgtcactaaaagctggtggtgtaggcttgaacttgactgcagcctcaaatgttttcctaatggtatgtat |
16514529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 377
Target Start/End: Original strand, 35874098 - 35874164
Alignment:
| Q |
311 |
taggatccatggtggaatcctgcagttgaggagcaagcaataatgaggattcatcgtattggacaaa |
377 |
Q |
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| T |
35874098 |
taggatccatggtggaatccagctgttgaggaacaagctgttatgcgtattcatcgcattggacaaa |
35874164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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