View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8236_low_6 (Length: 459)
Name: NF8236_low_6
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_low_6 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 31034724 - 31034352
Alignment:
| Q |
13 |
tttggtgtttttgacaagaactttatgtcagtttgatgttttttattctctatatattgcatggattctaaccactatctccctttcttgaaattgtaga |
112 |
Q |
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| T |
31034724 |
tttggtgtttttgacaagaactttatgtcagtttgatgttttttattctctatatattgcatggattctaaccactatctccctttcttgaaattgtaga |
31034625 |
T |
|
| Q |
113 |
taagcagatgaaagtgaaaagaataagcttacattaatcatttaggagcttcaactttgctcttcttccaaatcacattgaaatgattttgatacaagga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31034624 |
taagcagatgaaagtgaaaagaataagcttacattaatcatttaggagcttcaactttgctcttcttccaaatcacattgaaatgattttgatacaagga |
31034525 |
T |
|
| Q |
213 |
ttagtacctgataagttggtgtgtgtaagattgtgagctacaacatatagcatcaatttttaacttatgtgatttgttggtttgtttgaatttaatcttt |
312 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31034524 |
ttagtacctgataagatggtgtgtgtaagattgtgagctacaacatatagcatcaatttttaacttatgtgatttgttggtttgtttgaatttaatcttt |
31034425 |
T |
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| Q |
313 |
tctttatttaatccccgacaatgttttgtattaatcccaatatgtgtctactcgttgtgtatgcaaagttgtt |
385 |
Q |
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| T |
31034424 |
tctttatttaatccccgacaatgttttgtattaatcccaatatgtgtctactcgttgtgcatgcaaagttgtt |
31034352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 31044129 - 31044041
Alignment:
| Q |
63 |
tatatattgcatggattctaaccactatctccctttcttgaaattgtagataagcagatgaaagtgaaaagaataagcttacattaatc |
151 |
Q |
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| T |
31044129 |
tatatatggcatggattctaaccactatctccttttctcaaaattgtagataagaagatgaaggtgaaaagctgaagcttacattaatc |
31044041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 38824387 - 38824544
Alignment:
| Q |
13 |
tttggtgtttttgacaagaactttatgtcagtttgatgttttttattctctatatattgcatggattctaaccactatctccctttcttgaaattgtaga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38824387 |
tttggtgtttttgacaagaactttatgtcagtttgatgttttttattct--atatattgcatggattctaaccactatctccctttcctgaaattgtaga |
38824484 |
T |
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| Q |
113 |
taagcagatgaaagtgaaaagaataagcttacattaatcatttaggagcttcaactttgc |
172 |
Q |
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| T |
38824485 |
taagcagatgaaagtgaaaagaataagcttacattaatcattttagagcttcaactttgc |
38824544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 30366385 - 30366542
Alignment:
| Q |
13 |
tttggtgtttttgacaagaactttatgtcagtttgatgttttttattctctatatattgcatggattctaaccactatctccctttcttgaaattgtaga |
112 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30366385 |
tttggtgtttttgacaagaactttatgtcagtttgatgttttttattct--atatattgcatggattctaaccactatctccctttcctgaaattgtaga |
30366482 |
T |
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| Q |
113 |
taagcagatgaaagtgaaaagaataagcttacattaatcatttaggagcttcaactttgc |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30366483 |
taagcagatgaaagtgaaaagaataagcttacattaatcatttcagagcttcaactttgc |
30366542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 438
Target Start/End: Original strand, 30478 - 30549
Alignment:
| Q |
367 |
ttgtgtatgcaaagttgttataacatactggttttgtcttatattaagataaatttcattactcatgaatca |
438 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||| |
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| T |
30478 |
ttgtgcatgcaaagttgttataacatactggttttgtcctatattaagctaaatttctttactcaggaatca |
30549 |
T |
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