View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8236_low_8 (Length: 435)
Name: NF8236_low_8
Description: NF8236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8236_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 47280480 - 47280070
Alignment:
| Q |
13 |
aatattacaagggaagacgtggcaacccatctccaggcatttttccagtcctttacactttaatttatataagttaagtaattttttcgctgaatgtttc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280480 |
aatattacaagggaagacgtggcaacccatctccaggcatttttccagtcctttacactttaatttatataagttaagtaattttttcgctgaatgtttc |
47280381 |
T |
|
| Q |
113 |
cagtttatgaaatggctgcagaagtatagactctttctgaaaagaatggatagttctggacattttcacaataatactatcagatccttttcacctgctg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280380 |
cagtttatgaaatggctgcagaagtatagactctttctgaaaagaatggatagttctggacattttcacaataatactatcagatccttttcacctgctg |
47280281 |
T |
|
| Q |
213 |
ggatagttggtaatctgaacactccagctggtctgaacgggcagtttggccataactcccgataatcagaatatacttcggggaatgccaatgtccatat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47280280 |
ggatagttggtaatctgaacactccagctggtctgaacgggcagtttggccataactcccgataatcagaatatacttcggggaacgccaatgtccatat |
47280181 |
T |
|
| Q |
313 |
ggtttgatcacttgcaaaacagcaaggatatccagacaaattatttcccctcaagtgaatgttttagacagatagctattcttccttcagatgacaaggc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280180 |
ggtttgatcacttgcaaaacagcaaggatatccagacaaattatttcccctcaagtgaatgttttagacagatagctattcttccttcagatgacaaggc |
47280081 |
T |
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| Q |
413 |
ttctttgtgat |
423 |
Q |
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||||||||||| |
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| T |
47280080 |
ttctttgtgat |
47280070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 49060360 - 49060205
Alignment:
| Q |
4 |
atgtcgaagaatattacaagggaagacgtggcaacccatctccaggcatttttccagtcctttacactttaatttatataagttaagtaattt-tttcgc |
102 |
Q |
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|||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| ||| |||||||||||||||||| ||||||| ||| |||| | |
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| T |
49060360 |
atgtcgaa-aatattacaagggagaacgtggcaagccatctccaggtatttttctagttctttacactttaatttatgcaagttaaaccctttctttcac |
49060262 |
T |
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| Q |
103 |
tgaatgtttccagtttatgaaatggctgcagaagtatagactctttctgaaaagaat |
159 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
49060261 |
tgaatgtttctggtttatgaaatggctgcagaagtatagactttatctgaaaagaat |
49060205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 47274698 - 47274566
Alignment:
| Q |
13 |
aatattacaagggaagacgtggcaacccatctccaggcatttttccagtcctttacactttaatttatataagttaagtaattt-tttcgctgaatgttt |
111 |
Q |
| |
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|||||||||||||| |||||||| | |||||||| |||| ||||| |||||||||| ||||||||||| | |||||| | |||| |||| |||||||||| |
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| T |
47274698 |
aatattacaagggaggacgtggcgagccatctccgggcaattttctagtcctttacgctttaatttatctcagttaaatcatttctttcactgaatgttt |
47274599 |
T |
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| Q |
112 |
ccagtttatgaaatggctgcagaagtatagact |
144 |
Q |
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| ||| |||||||||||||||||||||||||| |
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| T |
47274598 |
ctggttgatgaaatggctgcagaagtatagact |
47274566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 49059951 - 49059873
Alignment:
| Q |
261 |
gccataactcccgataatcagaatatacttcggggaatgccaatgtccatatggtttgatcacttgcaaaacagcaagg |
339 |
Q |
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| T |
49059951 |
gccataactcccgttaatcagaatattcttcagggaatgccaatgtccatagggtttgatcacttgcaaaacagcaagg |
49059873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 49060137 - 49060037
Alignment:
| Q |
155 |
agaatggatagttctggacattttcacaataatactatcagatccttttcacctgctgggatagttggtaatctgaacactccagctggtctgaacgggc |
254 |
Q |
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||||||| | ||||||||||||||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||||||| || |||| ||||||| |
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| T |
49060137 |
agaatgggtggttctggacattttcacaataatgctttcagatccttttcacctagtgggataattggtaatctgaacactccaactagtcttaacgggc |
49060038 |
T |
|
| Q |
255 |
a |
255 |
Q |
| |
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| |
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|
| T |
49060037 |
a |
49060037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 49059576 - 49059499
Alignment:
| Q |
342 |
atccagacaaattatttcccctcaagtgaatgttttagacagatagctattcttccttcagatgacaaggcttctttg |
419 |
Q |
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||||| ||||||| |||| | |||||||||||||||||||||| |||| ||| |||||||||| ||| |||||||||| |
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| T |
49059576 |
atccaaacaaattctttctcttcaagtgaatgttttagacagacagctgttcctccttcagataacatggcttctttg |
49059499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 16515487 - 16515448
Alignment:
| Q |
342 |
atccagacaaattatttcccctcaagtgaatgttttagac |
381 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |
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| T |
16515487 |
atccagacaaattatttcccttcaagtgaatgttttagac |
16515448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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