View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8237_high_10 (Length: 201)
Name: NF8237_high_10
Description: NF8237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8237_high_10 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 22517111 - 22517294
Alignment:
| Q |
18 |
caaacaccgcacctcacgtcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgcaaaattcttgtaattggttcacactgtc |
117 |
Q |
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| T |
22517111 |
caaacaccgcacctcacgtcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgcaaaattcttgtaattggttcacactgtc |
22517210 |
T |
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| Q |
118 |
catccaatatcattccactttggtcaccagaaacaaggcgaagagagttgatgtcaaaatataatactgtcaagggaacaccac |
201 |
Q |
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| T |
22517211 |
catccaagatcattccactttggtcaccagaaacaaggcgaagagagttgatgtcaaaatataatactgtcaagggaacaccac |
22517294 |
T |
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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 416707 - 416635
Alignment:
| Q |
18 |
caaacaccgcacctcacgtcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgca |
90 |
Q |
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| T |
416707 |
caaacaccacacctcacgtcacgacttccatgagcacacacaaaaatatatgaacctgctatcacgtcttgca |
416635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 405536 - 405464
Alignment:
| Q |
18 |
caaacaccgcacctcacgtcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgca |
90 |
Q |
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| T |
405536 |
caaacaccacacctcacatcacgacttccgtgagcacacacaaaattatatgaacctgctatcacatcttgca |
405464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 399846 - 399897
Alignment:
| Q |
39 |
cgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgca |
90 |
Q |
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| T |
399846 |
cgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgca |
399897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 9709941 - 9710014
Alignment:
| Q |
128 |
cattccactttggtcaccagaaacaaggcgaagagagttgatgtcaaaatataatactgtcaagggaacaccac |
201 |
Q |
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| T |
9709941 |
cattccactctggtcaccagaaaccaggagaagagacttgatgtcaaaatataattctgtcaatggtacaccac |
9710014 |
T |
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