View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8237_low_1 (Length: 533)

Name: NF8237_low_1
Description: NF8237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8237_low_1
NF8237_low_1
[»] chr5 (3 HSPs)
chr5 (8-337)||(15565771-15566105)
chr5 (337-450)||(15566050-15566163)
chr5 (458-517)||(15567482-15567541)
[»] scaffold0517 (2 HSPs)
scaffold0517 (98-268)||(6529-6695)
scaffold0517 (8-54)||(6412-6457)
[»] chr1 (4 HSPs)
chr1 (98-268)||(37401381-37401547)
chr1 (181-265)||(28253223-28253305)
chr1 (98-141)||(28252951-28252994)
chr1 (8-54)||(37401619-37401664)
[»] chr2 (2 HSPs)
chr2 (461-517)||(14462012-14462068)
chr2 (458-517)||(15089315-15089374)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 337
Target Start/End: Original strand, 15565771 - 15566105
Alignment:
Q  8 gagtttggtgttccaaaggaggggaatttatatgatattttgatggcnnnnnnnnagggcaaatgaagtttctttttaattatgtttatgttatgttaag 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  15565771 gagtttgatgttccaaaggaggggaatttatatgatattttgatggcttttttt-agggcaaatgaagtttctttttaattatgtttatgttatgttaag 15565869  T
Q  108 gctatgaccttgtcgtt---gtttatgtctttaaatttgaaacttagtttaagnnnnnnnn--ctctgttgaaccattattaaaatgtcaatggtaaaaa 202  Q
    ||||||||||| ||  |   ||||||||||||||||||| | ||| |||||||          |||| ||||||||||||||||||||||||||||||||    
T  15565870 gctatgaccttttcaattctgtttatgtctttaaatttggatctttgtttaagttttttttttctctattgaaccattattaaaatgtcaatggtaaaaa 15565969  T
Q  203 atcatt-atgtacggtaacaacttttgatggaatgaatgtatttggttcgaagagaaaaatggtgtagtgttcaatttattttcttctattggattgcaa 301  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||    
T  15565970 atcatttatgtacggtaacaacttttgatggaatgaatgtatttggttcgaagagaaaaatggtgtagtgttcaatttattttcttacagtggattgcaa 15566069  T
Q  302 aattgaggggagtaaaattgcactagaaatatttat 337  Q
    |||||| |||||||||||||||||||||||||||||    
T  15566070 aattgatgggagtaaaattgcactagaaatatttat 15566105  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 337 - 450
Target Start/End: Original strand, 15566050 - 15566163
Alignment:
Q  337 tttcttatactggattgcaaaatttaggggagtaaaattgcactagaattatttataacgacatcggtatttttaaaatccaaatatataattcaagagt 436  Q
    ||||||| | |||||||||||||| | ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15566050 tttcttacagtggattgcaaaattgatgggagtaaaattgcactagaaatatttataacgacatcagtatttttaaaatccaaatatataattcaagagt 15566149  T
Q  437 tttatcaatatatg 450  Q
    ||||||||||||||    
T  15566150 tttatcaatatatg 15566163  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 517
Target Start/End: Original strand, 15567482 - 15567541
Alignment:
Q  458 tgcttataatcttttgacaacttatgcagttggtattgatcatcgttttaatcatgtttt 517  Q
    ||||||||||||||||||||||| ||| ||||||||| || | |||||||||||||||||    
T  15567482 tgcttataatcttttgacaacttctgcggttggtattaatgaccgttttaatcatgtttt 15567541  T

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Target: scaffold0517 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 6529 - 6695
Alignment:
Q  98 ttatgttaaggctatgaccttgtcgttgtttatgtctttaaatttgaaacttagtttaagnnnnnnnnctctgttgaaccattattaaaatgtcaatggt 197  Q
    |||||||| || ||||||||| |||||||||| ||||||||||| | |  || |||||||        |||| |||||||||||   |||||||||||||    
T  6529 ttatgttatggatatgaccttctcgttgtttaagtctttaaattaggatttttgtttaagtattttatctctattgaaccatta---aaatgtcaatggt 6625  T
Q  198 aaaaaatcattatgtacggtaacaacttttgatggaatgaatgtatttggttcgaagagaaaaatggtgta 268  Q
     ||||||||||||||| || ||||||||||||| ||||| || |||||||||||||| |||||||| ||||    
T  6626 caaaaatcattatgtaaggcaacaacttttgat-gaatggatttatttggttcgaagggaaaaatgatgta 6695  T

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Target: scaffold0517; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 6412 - 6457
Alignment:
Q  8 gagtttggtgttccaaaggaggggaatttatatgatattttgatggc 54  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||||||    
T  6412 gagtttgatgttccaaagg-ggggaatttgtatgatattttgatggc 6457  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 37401547 - 37401381
Alignment:
Q  98 ttatgttaaggctatgaccttgtcgttgtttatgtctttaaatttgaaacttagtttaagnnnnnnnnctctgttgaaccattattaaaatgtcaatggt 197  Q
    |||||||| || ||||||||| |||||||||| ||||||||||| | |  || |||||||        |||| |||||||||||   |||||||||||||    
T  37401547 ttatgttatggatatgaccttctcgttgtttaagtctttaaattaggatttttgtttaagtattttatctctattgaaccatta---aaatgtcaatggt 37401451  T
Q  198 aaaaaatcattatgtacggtaacaacttttgatggaatgaatgtatttggttcgaagagaaaaatggtgta 268  Q
     ||||||||||||||| || ||||||||||||| ||||| || |||||||||||||| |||||||| ||||    
T  37401450 caaaaatcattatgtaaggcaacaacttttgat-gaatggatttatttggttcgaagggaaaaatgatgta 37401381  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 265
Target Start/End: Original strand, 28253223 - 28253305
Alignment:
Q  181 attaaaatgtcaatggtaaaaaatcattatgtacggtaacaacttttgatggaatgaatgtatttggttcgaagagaaaaatggt 265  Q
    ||||||||||||||||| ||||||||||||| | || |||||||||||||  ||||||| ||||||||||||| |||||||||||    
T  28253223 attaaaatgtcaatggtcaaaaatcattatgcaaggcaacaacttttgat-taatgaatttatttggttcgaa-agaaaaatggt 28253305  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 28252951 - 28252994
Alignment:
Q  98 ttatgttaaggctatgaccttgtcgttgtttatgtctttaaatt 141  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||    
T  28252951 ttatgttatggctatggccttctcgttgtttatgtctttaaatt 28252994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 37401664 - 37401619
Alignment:
Q  8 gagtttggtgttccaaaggaggggaatttatatgatattttgatggc 54  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||||||    
T  37401664 gagtttgatgttccaaagg-ggggaatttgtatgatattttgatggc 37401619  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 517
Target Start/End: Original strand, 14462012 - 14462068
Alignment:
Q  461 ttataatcttttgacaacttatgcagttggtattgatcatcgttttaatcatgtttt 517  Q
    |||||||||||||||||||| ||  |||||||||||| |  ||||||||||||||||    
T  14462012 ttataatcttttgacaacttttgaggttggtattgatgagtgttttaatcatgtttt 14462068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 517
Target Start/End: Original strand, 15089315 - 15089374
Alignment:
Q  458 tgcttataatcttttgacaacttatgcagttggtattgatcatcgttttaatcatgtttt 517  Q
    |||||||||||||| || ||||| || ||||||| ||||| | |||||||||||||||||    
T  15089315 tgcttataatctttcgataacttctgaagttggtgttgatgaacgttttaatcatgtttt 15089374  T

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