View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8237_low_12 (Length: 240)
Name: NF8237_low_12
Description: NF8237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8237_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 32830974 - 32830750
Alignment:
| Q |
15 |
attaatatcattcatcatttactagannnnnnnnnggttgcatcgtttattagaaatttgaaataacagataaaaaatttacttgtgactttattaatct |
114 |
Q |
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| T |
32830974 |
attaatatcattcatcatttactagatttttttttggttacatcgtttattaaaaatttgaaataacagataaaaagtttacttgtgactttattaatct |
32830875 |
T |
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| Q |
115 |
atatacgtccagctacaaatttagatgnnnnnnnnnntataaagtggaaaattaccaccagttacgagaggtatagcatgtaaaattcaaatatatacat |
214 |
Q |
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| T |
32830874 |
atatacgtccagctacaaatttagatgaaaaacaaa-tataaagtggaaaattaccaccagttacgagaggtatagcatgtaaaattcaaatatatacat |
32830776 |
T |
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| Q |
215 |
atttgaattttgaaggaaccgttatc |
240 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32830775 |
atttgaattttgaaggaaccgttatc |
32830750 |
T |
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