View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8237_low_2 (Length: 433)
Name: NF8237_low_2
Description: NF8237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8237_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 10330758 - 10330350
Alignment:
| Q |
1 |
ttcccttttcagccttttctttattctttatagttgatttcctttcatgaatcccttccccagctttaacgcattaaaataannnnnnnn-cttatgcgt |
99 |
Q |
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| T |
10330758 |
ttcccttttcagccttttctttattctttatggttgatttcctttcatgaatcccttccccagctttaacgcattaaaatattttttttttcttatgcgt |
10330659 |
T |
|
| Q |
100 |
cnnnnnnn-gtttgtttctttactattaatttttcttgtttgtcaaactaaagagtactcgcatttattcattattgtttttggtgatgttgtaaaagag |
198 |
Q |
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| T |
10330658 |
ctaaaaaaagtttgtttctttactattaatttttcttgtttgtcaaactaaagagtaatcgcatttattcattattgtttttggtgatgtggtaaaagag |
10330559 |
T |
|
| Q |
199 |
agaacaacacctaaaggaaaacatggtggatatctattgaagaaaggaaaaggaaagaaaggtgacaccaactcctgatacatgtgttat-tattattgt |
297 |
Q |
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| T |
10330558 |
aggacaacacctaaaggaaaacatggtggatatctattgaagaagggaaaaggaaagaaaggtgacaccaa-tttttatttat---ttatatattat--- |
10330466 |
T |
|
| Q |
298 |
aatttatataatctcgcatatttaaggataaaaatgattgttcaatcttattatataactatagacattggtaaatatttgcaaatgcaaactaacattt |
397 |
Q |
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| T |
10330465 |
-agcgatatcatctcacatatttaaggataaaaatgattgttcaatc---ttatataactatagacattggtaagtatttgcaaatgcaaactaacattt |
10330370 |
T |
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| Q |
398 |
tgttccaataaatttataat |
417 |
Q |
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| T |
10330369 |
tgttccaataaatttataat |
10330350 |
T |
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