View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8237_low_3 (Length: 424)
Name: NF8237_low_3
Description: NF8237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8237_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Complemental strand, 23529446 - 23529047
Alignment:
| Q |
17 |
agataacatatgtcttttttagtttaattagctagatgtctcgatctatattgtactagtgaataattacttactatatgacgtacgttaaattttaata |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23529446 |
agataatatatgtcttttttagtttaattagctagatgtctcgatctatattgtactagtgaataattacttactatatgacgtacattaaattttaata |
23529347 |
T |
|
| Q |
117 |
aatcgttgtattgtataggtctgggcttctggctatgtgcaactcagaaatgttgttgactgttttcaagaatattactgttgaagttacagatgacgta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23529346 |
aatcgttgtattgtataggtctgggcttctggctatgtgcaactcagaaatgttgttgactgttttcaagaatattactgttgaagttgcagatgacgta |
23529247 |
T |
|
| Q |
217 |
gacgagtaacaaagagcactataaacaagttaaaattaatatttaccaaccaataagattgtcgggtttttctcgtgaattgaacgtgtaagaaatggga |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23529246 |
gacgagtaacaatgagcactataaacaagttaaaattaatatttaccaaccaataagattgtcgggtttttctcgtgaattgaacgtgtaagaaatggga |
23529147 |
T |
|
| Q |
317 |
caaagggcaagtacttgagccataatcagtagagttgtaatgtacggttagagttgaataattttttaaccatcccaatctctccttaatcaagtataat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23529146 |
caaagggcaagtacttgagccataatcagtagagttgtaatgtacggttagagttgaataattttttaaccatcccaatctctccttaatcaagtataat |
23529047 |
T |
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