View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8237_low_4 (Length: 405)
Name: NF8237_low_4
Description: NF8237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8237_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 7598239 - 7597857
Alignment:
| Q |
19 |
ctttgaatatatgagactgcttaaggataagggttgcctgttcatctagttaggccaatccaaaacagttgggcaaaatttctaggcaagttaaaaatta |
118 |
Q |
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| T |
7598239 |
ctttgaatatatgagactgcttaaggataagggttgcctgttcatctagttaggccaatccaaaacagttgggcaaaatttctaggcaagttaaaaatta |
7598140 |
T |
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| Q |
119 |
tctggccacatgtaaataactaaaacaacactttcc-----ccatcaatggcatgttggaacattttgaaacaaatccattcataaaaaacacgagnnnn |
213 |
Q |
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| T |
7598139 |
tctggccacatgtaaataaccaaaacaacactttcctttccccatcaatggcatgttggaacattttgaaacaaatccattcataaaaaacacgagagaa |
7598040 |
T |
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| Q |
214 |
nnnnnnntcaattacaagctactgctaacatacaaacctccatttcatccataatggaaggctttgtgcgctcctgatgaaactttcctttctctatcac |
313 |
Q |
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| T |
7598039 |
aaaaaa-tcaattacaagctactgctaacatacaaacctccatttcatccataatggaaggctttgtgcgctcctgatgaaactgtcctttctctatcac |
7597941 |
T |
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| Q |
314 |
cacatgctcaagcttcaacttgctgaaagctcttttcaacatccgaccctgtaaaaggaccgtatcatgtttatctaagtataa |
397 |
Q |
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| T |
7597940 |
cacatgctcaagcttcaacttgctgaaagctcttttcaacatccgaccctgtaaaaggaccgtatcatgtttatctaagtataa |
7597857 |
T |
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