View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8237_low_5 (Length: 392)
Name: NF8237_low_5
Description: NF8237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8237_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 27026254 - 27026621
Alignment:
| Q |
16 |
ctttcttctgagcaaaatcaacatacagtggtttgccatggaacatgcaccctgtagcatataacatcaacttaattgatgcataagcactaatataact |
115 |
Q |
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| T |
27026254 |
ctttcttctgagcaaaatcaacatacagtggtttgccatggaacatgcaccctgtagcatataacatcaacttaattgatgcataagcactaatataact |
27026353 |
T |
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| Q |
116 |
tctaacttggtaaaatatgtctatccnnnnnnntaataatgaaacataaccaaagttgtgtagagaacatggacctaaatggacttgttacttggataca |
215 |
Q |
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| T |
27026354 |
tctaacttggtaaaatatgtctatccaaaaaaataataatgaaacataaccaaagttgtgtagagaacatggacctaaatggacttgttacttggataca |
27026453 |
T |
|
| Q |
216 |
aatattttaatatcattaaaaaagtttcttaaaaggaagtaaggaacagggatgtaaattttcaagatcagaacttcaatcaaaattcagtacacagaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27026454 |
aatattttaatatcattaaaaaagtttcttaaaaggaagtaaggaacagggatgtaaattttcaagatcagaacttcaatcaaaattcagtacacagaaa |
27026553 |
T |
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| Q |
316 |
ataacatttaacatatatctaatctctcaaattataatccaataaatatacataacatgcagtattat |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27026554 |
ataacatttaacatatatctaatctctcaaattataatccaataaatatacataacatgcagtattat |
27026621 |
T |
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