View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8237_low_6 (Length: 349)
Name: NF8237_low_6
Description: NF8237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8237_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 39396424 - 39396713
Alignment:
| Q |
19 |
ctattgaacttaatagaatgtgcaaagtatatgtatttgacaagaaagagggaggacttggatgctgcgagtgccgtattttggacaaatcttgattcag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||| |
|
|
| T |
39396424 |
ctattgaacttaatagaatgtgcaaagtatatgtatttgacaagaaagagggaggacttggatgttgcaagtgccgtattttggacacatcttgattcag |
39396523 |
T |
|
| Q |
119 |
taaagttattgaacatgtttcatttgatattgatccttgacacaaaacaaataggtacaaacaaccattgcttaaaattgttgatgtaacatctacaaag |
218 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396524 |
tgaagttattgaacatgtttcatttgatattgatccttgacacaaaacaaataggtacaaacaaccattgcttaaaattgttgatgtaacatctacaaag |
39396623 |
T |
|
| Q |
219 |
ttatctttttcggcagcttttgcttatttggaacatgaacaacaagataattttatttgggcattccaaaatgttagatagttcatctca |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39396624 |
ttatctttttcggcagcttttgcttatttggaacatgaacaacaagataattttatttgggcattccaaaatgttagatagttcacctca |
39396713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 43598128 - 43598202
Alignment:
| Q |
182 |
accattgcttaaaattgttgatgtaacatctacaaagttatctttttcggcagcttttgcttatttggaacatga |
256 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||| | |||| || |||||||||||||||||||||||| |
|
|
| T |
43598128 |
accattgctttaaattgttagcgtaacatctatgaagttaacgtttttggtagcttttgcttatttggaacatga |
43598202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University