View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8238_high_1 (Length: 484)
Name: NF8238_high_1
Description: NF8238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8238_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 35057666 - 35057373
Alignment:
| Q |
1 |
tattatatctggaattatagcacaaagttactgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaac |
100 |
Q |
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| T |
35057666 |
tattatatctggaattatagcacaaagtt-ctgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaac |
35057568 |
T |
|
| Q |
101 |
gccatccaaaaatgaagtttcccaaaatttactgaccttgccttannnnnnncacctcataaacggtttttatgcaagtgactctttcaaaagctgaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35057567 |
gccatccaaaaatgaagtttcccaaaatttactgaccttgccttatttttttcacctcataaacggtttttatgcaagtgactctttcaaaagctgaatt |
35057468 |
T |
|
| Q |
201 |
tttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaattgtgtatggaaaacacacagggtaccg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |
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| T |
35057467 |
tttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaattgtatatggaaaacacacggagtaccg |
35057373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 295 - 445
Target Start/End: Complemental strand, 35057347 - 35057197
Alignment:
| Q |
295 |
gagtgtacagtagaagttcccaatttctaaaccttcctttacttttgtcacctgcttgtgcctataaaaatgatataagcaacacactccaagcagataa |
394 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35057347 |
gagtgtacggtagaagttcccaatttctaaaccttcctttacttttgtcacctgcttgtgcctataaaaatgatataagcagcacactccaagcagataa |
35057248 |
T |
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| Q |
395 |
aatagatacacccacatcaaacaagaaaaccatttccccttccaattttct |
445 |
Q |
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| T |
35057247 |
aatagatacacccacatcaaacaagaaaaccatttcctcttccaattttct |
35057197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 43017780 - 43017501
Alignment:
| Q |
10 |
tggaattatagcacaaagttactgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaacgccatccaa |
109 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| | || || |||||| |
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| T |
43017780 |
tggaattatagcacaaagtta-tgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaa-tcaaggctatccaa |
43017683 |
T |
|
| Q |
110 |
aaatgaagtt-----------------tcccaaaatttactgaccttgccttannnnnnncacctcataaacggtttttatgcaagtgactctttcaaaa |
192 |
Q |
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|||| | || ||||||||||||| | |||||||||| ||||| |||||||| ||||||||||||||||||||||||| |
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| T |
43017682 |
aaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaa |
43017583 |
T |
|
| Q |
193 |
gctgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaattgtgtatggaaaacaca |
285 |
Q |
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| T |
43017582 |
gctgaatttttcataaaatattagaataagtcttgccctatat-----------gtgactcattcaaaagctgaattgtgcatgcaaaacaca |
43017501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 43017482 - 43017449
Alignment:
| Q |
412 |
caaacaagaaaaccatttccccttccaattttct |
445 |
Q |
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| T |
43017482 |
caaacaagaaaaccatttcctcttccaattttct |
43017449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 38569811 - 38569754
Alignment:
| Q |
59 |
attttagagttattttatttcaaatgttaataaaaaattaacgccatccaaaaatgaa |
116 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||| ||| || ||||||||||||| |
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| T |
38569811 |
attttagagttattttatttcaaaagttagtaaaaaaataaggctatccaaaaatgaa |
38569754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 14328983 - 14329066
Alignment:
| Q |
185 |
tttcaaaagctgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaatt |
269 |
Q |
| |
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|||||||| ||||||||| || ||||||||| ||| | |||| ||||||||| |||||| ||||||||||||||||||| |||| |
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| T |
14328983 |
tttcaaaacctgaatttt-cacgaaatattaggataagccttggcctatatttctgcttttagtgactcattcaaaagcttaatt |
14329066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 14421993 - 14422076
Alignment:
| Q |
185 |
tttcaaaagctgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaatt |
269 |
Q |
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|||||||| ||||||||| || ||||||||| ||| | |||| ||||||||| |||||| ||||||||||||||||||| |||| |
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| T |
14421993 |
tttcaaaacctgaatttt-cacgaaatattaggataagccttggcctatatttctgcttttagtgactcattcaaaagcttaatt |
14422076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 8253278 - 8253314
Alignment:
| Q |
229 |
cctatatttatgctttgagtgactcattcaaaagctg |
265 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
8253278 |
cctatatttatgctttgagtagctcattcaaaagctg |
8253314 |
T |
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