View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8238_high_2 (Length: 467)
Name: NF8238_high_2
Description: NF8238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8238_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 10 - 452
Target Start/End: Original strand, 39794365 - 39794808
Alignment:
| Q |
10 |
attattctctcgtattaatgcgatgtcatttagctttgttttgtcacttttaagtgaaaaatacataacaaacgattgtcattacacaataacctaacac |
109 |
Q |
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| T |
39794365 |
attattctctcgtattaatgcgatgtcatttagctttgttttgtcacttttaagtgaaaaatacataacaaacgattgtcattacacaataacctaacac |
39794464 |
T |
|
| Q |
110 |
acattttacataaggaaatttggagttttgccaatggacaaccggtgtaaccagttaccaagtaaaaagtcattttatgggcaagctatctaactggtaa |
209 |
Q |
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| T |
39794465 |
acattttacataaggaaatttggagttttgccaatgaacaaccggtgtaaccggttaccaagtaaaaagtcattttatgggcaagctatctaactggtaa |
39794564 |
T |
|
| Q |
210 |
ccggttacctgtccctaaacattgttttcaggccctctataaagagtgtaaccggttaccatgtatatacaaccggttacataagctaaaaattcaattt |
309 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39794565 |
ccggttacctgtcccaaaacattgttttaaggccctctataaagagtgtaaccggttaccatgtatatacaaccggttgcataagctaaaaattcaattt |
39794664 |
T |
|
| Q |
310 |
ctcagcgaaaaca----aaggcaattacatacattatatgctactcttcaccaatgtataggaccacaatagcatgtaacgttattgctgggaaattagt |
405 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39794665 |
ctcagcgaaaacaaattaaggcaattacatacattatatgctactcttcaccaatgtataggaccacaatagcatgtaacgttat---tgggaaattagt |
39794761 |
T |
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| Q |
406 |
tgcattgttggactcagtctagagcttaaaataatggcagtaagagc |
452 |
Q |
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| T |
39794762 |
tgcattgttggactcagtctagagcttaaaataatggcagtaagagc |
39794808 |
T |
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