View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8238_high_6 (Length: 267)
Name: NF8238_high_6
Description: NF8238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8238_high_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 1722771 - 1722510
Alignment:
| Q |
7 |
tatattattctccatcttccaa-gcatctcatgaatatggaatcaagggaacaattcacgttttatgccacctagaaacatgtgatatattagcacctat |
105 |
Q |
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| T |
1722771 |
tatattattctccatcttccaaagcatctcatgaatatggaatcaagggaacaattcacgttttatgccacctagaaacatgtgatatattagcacctat |
1722672 |
T |
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| Q |
106 |
gtatattctccaccccacaatcccctattttttctgcaaacaagacggatccaaagagttaagacttgagattaggagcacaacatttttagatgaaaga |
205 |
Q |
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| T |
1722671 |
gtatattctccaccccacaatcccctattttttctgcaaacaagacggatccaaagagttaagacttgagattaggagcacaacatttttagatgaaaga |
1722572 |
T |
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| Q |
206 |
tcatnnnnnnntttagattttaagttggtagattatattcctctaaacaaaagttgggaaat |
267 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1722571 |
tcataaaaaagtttagattttaagttggtagattatattcctctaaacaaaagttgggaaat |
1722510 |
T |
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