View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8238_high_7 (Length: 239)
Name: NF8238_high_7
Description: NF8238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8238_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 52982661 - 52982439
Alignment:
| Q |
1 |
tttgggatttaaaaccctaagataacacattttaaacacctcattagctgtgacaatttgtttatttattagccactaatcctatttatttgtggattaa |
100 |
Q |
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| T |
52982661 |
tttgggatttaaaaccctaagataacacattttaaacacctcattagctgtgacaatttgtttatttattagccactaatcctatttatttgtggattaa |
52982562 |
T |
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| Q |
101 |
ctgtccaaatttctatacgtacgagctccctctatcacgtagtgttatgctctgtttcgcatacaagagaacaatactactgtctgcgattttgtgcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
52982561 |
ctgtccaaatttctatacgtacgagctccctctatcacgtagtgttatgctctgtttcgcatacaagagaacaatactacagtctgcgactttgtgcata |
52982462 |
T |
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| Q |
201 |
caaactctctctcaccttgctat |
223 |
Q |
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| T |
52982461 |
caaactctctctcaccttgctat |
52982439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 55663313 - 55663229
Alignment:
| Q |
126 |
ctccctctatcacgtagtgttatgctctgtttcgcatacaagagaacaatactactgtctgcgattttgtgcatacaaactctct |
210 |
Q |
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| T |
55663313 |
ctccttctctcacgtagtgttctgctttgtttcggatacaagaggacatcactattgtgtgtgactttatgcatacaaactctct |
55663229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24020950 - 24020900
Alignment:
| Q |
1 |
tttgggatttaaaaccctaagataacacattttaaacacctcattagctgtgac |
54 |
Q |
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| T |
24020950 |
tttgggatttaaaacccaaa-ataacac--tttaaacacctcattagctgtgac |
24020900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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