View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8238_low_1 (Length: 484)

Name: NF8238_low_1
Description: NF8238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8238_low_1
NF8238_low_1
[»] chr5 (4 HSPs)
chr5 (1-295)||(35057373-35057666)
chr5 (295-445)||(35057197-35057347)
chr5 (10-285)||(43017501-43017780)
chr5 (412-445)||(43017449-43017482)
[»] chr7 (1 HSPs)
chr7 (59-116)||(38569754-38569811)
[»] chr6 (2 HSPs)
chr6 (185-269)||(14328983-14329066)
chr6 (185-269)||(14421993-14422076)
[»] chr3 (1 HSPs)
chr3 (229-265)||(8253278-8253314)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 35057666 - 35057373
Alignment:
Q  1 tattatatctggaattatagcacaaagttactgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaac 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35057666 tattatatctggaattatagcacaaagtt-ctgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaac 35057568  T
Q  101 gccatccaaaaatgaagtttcccaaaatttactgaccttgccttannnnnnncacctcataaacggtttttatgcaagtgactctttcaaaagctgaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35057567 gccatccaaaaatgaagtttcccaaaatttactgaccttgccttatttttttcacctcataaacggtttttatgcaagtgactctttcaaaagctgaatt 35057468  T
Q  201 tttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaattgtgtatggaaaacacacagggtaccg 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  35057467 tttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaattgtatatggaaaacacacggagtaccg 35057373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 295 - 445
Target Start/End: Complemental strand, 35057347 - 35057197
Alignment:
Q  295 gagtgtacagtagaagttcccaatttctaaaccttcctttacttttgtcacctgcttgtgcctataaaaatgatataagcaacacactccaagcagataa 394  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35057347 gagtgtacggtagaagttcccaatttctaaaccttcctttacttttgtcacctgcttgtgcctataaaaatgatataagcagcacactccaagcagataa 35057248  T
Q  395 aatagatacacccacatcaaacaagaaaaccatttccccttccaattttct 445  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35057247 aatagatacacccacatcaaacaagaaaaccatttcctcttccaattttct 35057197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 43017780 - 43017501
Alignment:
Q  10 tggaattatagcacaaagttactgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaacgccatccaa 109  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| | || || ||||||    
T  43017780 tggaattatagcacaaagtta-tgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaataaaaa-tcaaggctatccaa 43017683  T
Q  110 aaatgaagtt-----------------tcccaaaatttactgaccttgccttannnnnnncacctcataaacggtttttatgcaagtgactctttcaaaa 192  Q
    |||| |  ||                 ||||||||||||| | ||||||||||       ||||| |||||||| |||||||||||||||||||||||||    
T  43017682 aaataattttctttaacgtttaatttttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaa 43017583  T
Q  193 gctgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaattgtgtatggaaaacaca 285  Q
    |||||||||||||||||||||||||||| ||||||||||||||           |||||||||||||||||||||||||| ||| ||||||||    
T  43017582 gctgaatttttcataaaatattagaataagtcttgccctatat-----------gtgactcattcaaaagctgaattgtgcatgcaaaacaca 43017501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 445
Target Start/End: Complemental strand, 43017482 - 43017449
Alignment:
Q  412 caaacaagaaaaccatttccccttccaattttct 445  Q
    |||||||||||||||||||| |||||||||||||    
T  43017482 caaacaagaaaaccatttcctcttccaattttct 43017449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 38569811 - 38569754
Alignment:
Q  59 attttagagttattttatttcaaatgttaataaaaaattaacgccatccaaaaatgaa 116  Q
    |||||||||||||||||||||||| |||| ||||||| ||| || |||||||||||||    
T  38569811 attttagagttattttatttcaaaagttagtaaaaaaataaggctatccaaaaatgaa 38569754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 14328983 - 14329066
Alignment:
Q  185 tttcaaaagctgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaatt 269  Q
    |||||||| ||||||||| ||  ||||||||| ||| | |||| ||||||||| |||||| ||||||||||||||||||| ||||    
T  14328983 tttcaaaacctgaatttt-cacgaaatattaggataagccttggcctatatttctgcttttagtgactcattcaaaagcttaatt 14329066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 14421993 - 14422076
Alignment:
Q  185 tttcaaaagctgaatttttcataaaatattagaatatgtcttgccctatatttatgctttgagtgactcattcaaaagctgaatt 269  Q
    |||||||| ||||||||| ||  ||||||||| ||| | |||| ||||||||| |||||| ||||||||||||||||||| ||||    
T  14421993 tttcaaaacctgaatttt-cacgaaatattaggataagccttggcctatatttctgcttttagtgactcattcaaaagcttaatt 14422076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 8253278 - 8253314
Alignment:
Q  229 cctatatttatgctttgagtgactcattcaaaagctg 265  Q
    ||||||||||||||||||||  |||||||||||||||    
T  8253278 cctatatttatgctttgagtagctcattcaaaagctg 8253314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University