View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8238_low_12 (Length: 221)
Name: NF8238_low_12
Description: NF8238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8238_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 53087211 - 53087344
Alignment:
| Q |
73 |
ttgaattgagaaaaatgaggaatttgatcctcgcttggagtcgacatgaatgatgagcccaatcaatttacccaacaacactagtagtggcagaagtagt |
172 |
Q |
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| T |
53087211 |
ttgaattgagaaaaatgaggaatttgatcctcgcttggagtcgacatgaatgatgaacccaatcaatttacccaacaacactagtagtggcagcagtagt |
53087310 |
T |
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| Q |
173 |
ag----ttaattcattaaaatagagtgagtaagg |
202 |
Q |
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| T |
53087311 |
agttaattaattcattaaaatagagtgagtaagg |
53087344 |
T |
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