View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8238_low_3 (Length: 426)

Name: NF8238_low_3
Description: NF8238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8238_low_3
NF8238_low_3
[»] chr4 (8 HSPs)
chr4 (11-333)||(49236589-49236913)
chr4 (138-191)||(20580088-20580141)
chr4 (141-199)||(13404205-13404263)
chr4 (139-199)||(51291126-51291186)
chr4 (139-198)||(48803895-48803953)
chr4 (139-185)||(949900-949946)
chr4 (139-212)||(25138920-25138993)
chr4 (138-190)||(32325285-32325337)
[»] chr7 (3 HSPs)
chr7 (139-198)||(37797976-37798035)
chr7 (140-198)||(8327836-8327894)
chr7 (140-185)||(46794953-46794998)
[»] chr1 (9 HSPs)
chr1 (143-201)||(44957040-44957098)
chr1 (142-197)||(9554085-9554140)
chr1 (139-197)||(48872202-48872260)
chr1 (140-221)||(29014515-29014595)
chr1 (149-198)||(40615971-40616020)
chr1 (146-193)||(5423758-5423805)
chr1 (148-185)||(14579451-14579488)
chr1 (138-195)||(29523567-29523624)
chr1 (144-193)||(40406247-40406295)
[»] chr3 (12 HSPs)
chr3 (145-201)||(53766697-53766753)
chr3 (138-215)||(50941718-50941795)
chr3 (138-212)||(4842635-4842708)
chr3 (138-212)||(4868331-4868404)
chr3 (138-208)||(26886053-26886123)
chr3 (138-195)||(7590728-7590785)
chr3 (139-208)||(22288471-22288540)
chr3 (139-208)||(22288757-22288826)
chr3 (138-208)||(25299034-25299104)
chr3 (140-212)||(39806802-39806872)
chr3 (149-185)||(8825242-8825278)
chr3 (149-185)||(47930131-47930167)
[»] chr2 (2 HSPs)
chr2 (138-193)||(3723400-3723455)
chr2 (139-186)||(36144078-36144125)
[»] chr8 (8 HSPs)
chr8 (139-198)||(35139030-35139089)
chr8 (144-193)||(18181238-18181287)
chr8 (138-199)||(18808772-18808833)
chr8 (143-187)||(36782781-36782825)
chr8 (146-197)||(8785291-8785342)
chr8 (146-200)||(1502675-1502729)
chr8 (139-197)||(28460000-28460058)
chr8 (138-198)||(39644140-39644200)
[»] chr5 (2 HSPs)
chr5 (140-201)||(20041620-20041681)
chr5 (145-185)||(22528751-22528791)
[»] scaffold0009 (1 HSPs)
scaffold0009 (139-198)||(168765-168824)
[»] chr6 (2 HSPs)
chr6 (139-214)||(16109366-16109440)
chr6 (139-197)||(5924769-5924827)
[»] scaffold0036 (1 HSPs)
scaffold0036 (139-197)||(88277-88335)
[»] scaffold0717 (1 HSPs)
scaffold0717 (138-191)||(4975-5028)
[»] scaffold0018 (1 HSPs)
scaffold0018 (138-191)||(67719-67772)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 49236589 - 49236913
Alignment:
Q  11 attaaaaacctggctagtagtctaaaaa---gagcattttgttaaaattaaaagtaaatgggtattgttaacgagtagcttcggtgcaatttttaggaat 107  Q
    |||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||||| |    
T  49236589 attaaaaacctggctagtagtctaaataaacgagcattttgttaaaattaaaagtaaatgggtattgttaacgagtggcttcgatgcactctttagga-t 49236687  T
Q  108 ttttaatgaataaattattttnnnnnnnnngtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaa 207  Q
    ||||||||||||||||||| |          |||| | || |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||  ||||    
T  49236688 ttttaatgaataaattattctttaaaaaaaataaataatttaattttcaatacaataaatacacaaatttttataaaatattatcactttagatgcttaa 49236787  T
Q  208 aaaatatctcaaagcacctgttaacattttccaaagtaaataaataaacaagagtgcattttaggacagtatattatattacgaccctcgcacattatag 307  Q
    | | |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49236788 agagtatctcaaagcacccgtcaacattttccaaagtaaataaataaacaagagtgcattttaggacagtatattatattacgaccctcgcgcattatag 49236887  T
Q  308 gacggtaaattatgttacgacactca 333  Q
    ||||||||||||||||||||||||||    
T  49236888 gacggtaaattatgttacgacactca 49236913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 20580141 - 20580088
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattac 191  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  20580141 gtaaagacttcaatttccaatataataaatacataaactttcataaaatattac 20580088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 13404205 - 13404263
Alignment:
Q  141 aagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttag 199  Q
    ||||||||||||| |||   |||||||||||||| ||||||||||| ||||||||||||    
T  13404205 aagacttcaatttccaacgtaataaatacataaactttcataaaatcttaccactttag 13404263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 51291126 - 51291186
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttag 199  Q
    ||||||||||||||| |||| |||||||| || ||| ||||||||||| |||||| |||||    
T  51291126 taaagacttcaatttccaatgcaataaatgcacaaactttcataaaatcttaccattttag 51291186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 48803953 - 48803895
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 198  Q
    ||||||||| |||||||||| ||||||||| | ||||||||||||||| |||||| ||||    
T  48803953 taaagactttaattttcaatgcaataaata-acaaattttcataaaattttaccatttta 48803895  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 949946 - 949900
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaa 185  Q
    |||||||||||||||||||| |||||||| || ||| ||||||||||    
T  949946 taaagacttcaattttcaatgcaataaatgcacaaactttcataaaa 949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 25138993 - 25138920
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaat 212  Q
    |||| |||| ||||| |||| ||||||||  | |||||||||||||||  || |||||| ||||||||||||||    
T  25138993 taaaaactttaatttacaatgcaataaatgtacaaattttcataaaatcatatcacttttgatatttaaaaaat 25138920  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 32325337 - 32325285
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatatta 190  Q
    |||||||||||| ||| |||||||||| ||||  ||| |||||||||||||||    
T  32325337 gtaaagacttcactttccaatacaatagatacgcaaactttcataaaatatta 32325285  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 37797976 - 37798035
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 198  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||||    
T  37797976 taaagacttcaattttcaatataataaatgcataaattttcataaaatcttaccatttta 37798035  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 8327894 - 8327836
Alignment:
Q  140 aaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 198  Q
    |||||||||||||| |||||||||||||||| ||| ||| ||||||| |||||| ||||    
T  8327894 aaagacttcaatttccaatacaataaatacacaaacttttataaaatcttaccatttta 8327836  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 46794998 - 46794953
Alignment:
Q  140 aaagacttcaattttcaatacaataaatacataaattttcataaaa 185  Q
    |||||||||||||||||||  ||||||| |||||||||| ||||||    
T  46794998 aaagacttcaattttcaatgtaataaatgcataaatttttataaaa 46794953  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 44957098 - 44957040
Alignment:
Q  143 gacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagat 201  Q
    ||||||||||||||||||||||| |  ||||||||||||||||| ||||||||||||||    
T  44957098 gacttcaattttcaatacaataattgtataaattttcataaaatcttaccactttagat 44957040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 197
Target Start/End: Original strand, 9554085 - 9554140
Alignment:
Q  142 agacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 197  Q
    |||||||||||||||||||| ||||| || ||| |||||||||||||||| |||||    
T  9554085 agacttcaattttcaatacattaaatgcacaaactttcataaaatattactacttt 9554140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 48872202 - 48872260
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 197  Q
    ||||||||||||||| ||||  ||||||| |||||| ||||||||||| ||||||||||    
T  48872202 taaagacttcaatttccaatgtaataaatgcataaactttcataaaatcttaccacttt 48872260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 29014595 - 29014515
Alignment:
Q  140 aaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaatatctcaaag 221  Q
    ||||| ||||||||||||||||| ||||||||| ||||| ||||||| |||| || |||| |  |||||||||||| |||||    
T  29014595 aaagatttcaattttcaatacaa-aaatacatagattttaataaaatcttactacattaggtgcttaaaaaatatcacaaag 29014515  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 40615971 - 40616020
Alignment:
Q  149 aattttcaatacaataaatacataaattttcataaaatattaccacttta 198  Q
    ||||| |||||||||||||||| ||||||| ||||||||||| |||||||    
T  40615971 aatttccaatacaataaatacacaaatttttataaaatattatcacttta 40616020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 5423805 - 5423758
Alignment:
Q  146 ttcaattttcaatacaataaatacataaattttcataaaatattacca 193  Q
    ||||||||||||| || ||||||||||| ||||||||||| |||||||    
T  5423805 ttcaattttcaatgcattaaatacataagttttcataaaaaattacca 5423758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 14579488 - 14579451
Alignment:
Q  148 caattttcaatacaataaatacataaattttcataaaa 185  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  14579488 caatttttaatacaataaatacataacttttcataaaa 14579451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 29523624 - 29523567
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccact 195  Q
    ||||| |||||||||| |||| ||||||||||| ||| ||||||| ||| ||||||||    
T  29523624 gtaaaaacttcaatttccaatgcaataaatacacaaactttcatacaatcttaccact 29523567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 40406247 - 40406295
Alignment:
Q  144 acttcaattttcaatacaataaatacataaattttcataaaatattacca 193  Q
    |||||||||||||||||||| |||||| ||| ||||||||||| ||||||    
T  40406247 acttcaattttcaatacaat-aatacacaaactttcataaaatcttacca 40406295  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 53766753 - 53766697
Alignment:
Q  145 cttcaattttcaatacaataaatacataaattttcataaaatattaccactttagat 201  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||    
T  53766753 cttcaattttcaatgcaataaatacacaaactttcataaaatattaccattttagat 53766697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 50941718 - 50941795
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaatatc 215  Q
    ||||| |||||||||| |||| |||||||| || ||| ||||||||||| |||||||| ||| | |||||||||||||    
T  50941718 gtaaaaacttcaatttccaatgcaataaatgcacaaactttcataaaatcttaccactgtaggtctttaaaaaatatc 50941795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 4842708 - 4842635
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaat 212  Q
    |||||||||||||||| ||||| ||||||| | | || ||||||||||| ||||||||||||||  |||||||||    
T  4842708 gtaaagacttcaatttccaatataataaatgc-tcaactttcataaaatcttaccactttagatgcttaaaaaat 4842635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 4868404 - 4868331
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaat 212  Q
    |||||||||||||||| ||||| ||||||| | | || ||||||||||| |||||||||||||| ||| ||||||    
T  4868404 gtaaagacttcaatttccaatataataaatgc-tcaactttcataaaatcttaccactttagatgtttgaaaaat 4868331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 26886123 - 26886053
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaa 208  Q
    ||||| |||||||||||||||||||| ||| || ||| ||||||||||  |||||||||| ||| ||||||    
T  26886123 gtaaaaacttcaattttcaatacaatgaatgcacaaactttcataaaaacttaccactttggatgtttaaa 26886053  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 7590728 - 7590785
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccact 195  Q
    ||||| |||| ||||| |||||||||||||||| ||| ||||||||||| ||||||||    
T  7590728 gtaaatactttaatttccaatacaataaatacacaaactttcataaaatcttaccact 7590785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 22288540 - 22288471
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaa 208  Q
    |||||| |||||||||||||| ||||||| || ||| ||||||||||| |||||| ||| |||| |||||    
T  22288540 taaagatttcaattttcaatataataaatgcacaaactttcataaaatcttaccattttggatacttaaa 22288471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 22288826 - 22288757
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaa 208  Q
    |||||| || |||||| |||| ||||||| || ||||||||||||||| |||||| ||| ||||||||||    
T  22288826 taaagattttaatttttaatataataaatgcacaaattttcataaaatcttaccattttggatatttaaa 22288757  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 25299104 - 25299034
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaa 208  Q
    ||||||| ||||||||||||| |||||||| || ||| ||||||||||| |||  ||||||| | ||||||    
T  25299104 gtaaagatttcaattttcaatgcaataaatgcacaaactttcataaaatcttattactttaggtgtttaaa 25299034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 39806802 - 39806872
Alignment:
Q  140 aaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaat 212  Q
    ||||| |||||||||||||  ||||||| || ||||||||  |||||||||||||||| |||  |||||||||    
T  39806802 aaagatttcaattttcaatgtaataaatgcacaaattttc--aaaatattaccactttggatgcttaaaaaat 39806872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 8825278 - 8825242
Alignment:
Q  149 aattttcaatacaataaatacataaattttcataaaa 185  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  8825278 aattttcaatacactaaatacatgaattttcataaaa 8825242  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 47930131 - 47930167
Alignment:
Q  149 aattttcaatacaataaatacataaattttcataaaa 185  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  47930131 aattttcaatacattaaatacacaaattttcataaaa 47930167  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 3723400 - 3723455
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattacca 193  Q
    ||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||    
T  3723400 gtaaagacttcaattttcaatgcaataaatacacaaattttcgtaaaatcttacca 3723455  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 36144078 - 36144125
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaat 186  Q
    ||||||||||||||| |||| ||||||||||| || ||||||||||||    
T  36144078 taaagacttcaatttccaattcaataaatacacaatttttcataaaat 36144125  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 35139089 - 35139030
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 198  Q
    |||||||||||||||||||| |||||||| || ||| ||||||||||||||  |||||||    
T  35139089 taaagacttcaattttcaatgcaataaatgcacaaactttcataaaatattttcacttta 35139030  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 18181287 - 18181238
Alignment:
Q  144 acttcaattttcaatacaataaatacataaattttcataaaatattacca 193  Q
    ||||||||||||||| ||||||||||| ||| |||||||||| |||||||    
T  18181287 acttcaattttcaatgcaataaatacacaaactttcataaaagattacca 18181238  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 18808833 - 18808772
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttag 199  Q
    ||||||||||||||||  ||| |||||||| |||||| ||||||||||| |||||| |||||    
T  18808833 gtaaagacttcaatttctaatgcaataaatgcataaactttcataaaatcttaccattttag 18808772  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 36782825 - 36782781
Alignment:
Q  143 gacttcaattttcaatacaataaatacataaattttcataaaata 187  Q
    ||||||||||||||||||||||||| || ||| ||||||||||||    
T  36782825 gacttcaattttcaatacaataaatgcacaaactttcataaaata 36782781  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 8785342 - 8785291
Alignment:
Q  146 ttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 197  Q
    |||||||| |||| ||||||||||| ||| ||||||||||| ||||||||||    
T  8785342 ttcaatttccaatgcaataaatacacaaaatttcataaaatcttaccacttt 8785291  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 1502729 - 1502675
Alignment:
Q  146 ttcaattttcaatacaataaatacataaattttcataaaatattaccactttaga 200  Q
    ||||||||||||| || |||||||  |||||||||||||| ||||| ||||||||    
T  1502729 ttcaattttcaatgcattaaatacgcaaattttcataaaaaattactactttaga 1502675  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 28460058 - 28460000
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 197  Q
    ||||||||||||||| |||| |||||||| || ||| ||| ||||||| ||||||||||    
T  28460058 taaagacttcaatttccaatgcaataaatgcacaaactttaataaaatcttaccacttt 28460000  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 39644200 - 39644140
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 198  Q
    ||||||||| |||||| |||||||||| ||  | ||| ||| |||||||||||||||||||    
T  39644200 gtaaagactacaatttccaatacaatagatgtacaaacttttataaaatattaccacttta 39644140  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 20041681 - 20041620
Alignment:
Q  140 aaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagat 201  Q
    |||||||||||||| |||| |||||||| ||||||||||| |||||| ||| || |||||||    
T  20041681 aaagacttcaatttccaatgcaataaatgcataaattttcgtaaaattttatcattttagat 20041620  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 22528791 - 22528751
Alignment:
Q  145 cttcaattttcaatacaataaatacataaattttcataaaa 185  Q
    ||||||||| | ||||| |||||||||||||||||||||||    
T  22528791 cttcaatttccgatacattaaatacataaattttcataaaa 22528751  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 168824 - 168765
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttta 198  Q
    ||||||||| ||||| ||||| ||||||| || ||| ||||||||||| |||||||||||    
T  168824 taaagactttaatttccaatataataaatgcacaaactttcataaaatcttaccacttta 168765  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 16109440 - 16109366
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccactttagatatttaaaaaatat 214  Q
    ||||||||||||||  |||| ||||||||  |||||||||  |||||| |||||||||||||| |||||| |||||    
T  16109440 taaagacttcaattc-caatgcaataaatgtataaatttttttaaaatgttaccactttagatgtttaaacaatat 16109366  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 5924769 - 5924827
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 197  Q
    |||||| || |||||||||||||||| || || ||| ||||||||||| ||||||||||    
T  5924769 taaagattttaattttcaatacaatatatgcacaaactttcataaaattttaccacttt 5924827  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 88277 - 88335
Alignment:
Q  139 taaagacttcaattttcaatacaataaatacataaattttcataaaatattaccacttt 197  Q
    |||| |||| ||||| ||||| ||||||| || ||| ||||||||||||||||||||||    
T  88277 taaaaactttaatttccaatataataaatgcacaaactttcataaaatattaccacttt 88335  T

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Target: scaffold0717 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 5028 - 4975
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattac 191  Q
    |||||||||||||||| |||||||| |||| |||||| |||||| |||| ||||    
T  5028 gtaaagacttcaatttccaatacaaaaaatgcataaactttcattaaatgttac 4975  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 67719 - 67772
Alignment:
Q  138 gtaaagacttcaattttcaatacaataaatacataaattttcataaaatattac 191  Q
    ||||||| || ||||| ||| |||||||||||| ||| ||||||||||||||||    
T  67719 gtaaagattttaatttccaaaacaataaatacacaaactttcataaaatattac 67772  T

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