View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8239_high_1 (Length: 608)
Name: NF8239_high_1
Description: NF8239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8239_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 51186311 - 51186917
Alignment:
| Q |
1 |
atgaagcaaacaggtctatttttcaatttgttgcttcttcttttcaacttagtttatgtcagtttaatttannnnnnnatgcaccaaaaagatattagcg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51186311 |
atgaagcaaacaagtctatttttcaatttgttgcttcttcttgtcaacttagtttatgtcagtttaatttatttttttatgcaccaaaaagatattagcg |
51186410 |
T |
|
| Q |
101 |
ttgatactttatccattcaatttgtgttgttctattttgccattgttctaaatactgtcttttgattttctttcaattatcttgcacttcatatggtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51186411 |
ttgatactttatccattcaatttgtgttgttctattttgccattgttctaaatactgtcttttgattttctttcaattatcttgcacttcatatggtttc |
51186510 |
T |
|
| Q |
201 |
attatctcttatacaaaaacttgctatatttctattcctctctccaaatgactgaaatttagttatttgataattgattgtcgaacctaaaatataaact |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51186511 |
attatctcttatacaaaa-cttgctatatttctattcctctctccaaatgactgaaatttagttatttgataattgattgtcgaacctaaaatataaact |
51186609 |
T |
|
| Q |
301 |
ctgacactttatttcttttcctcgaacaacactattagcaatatttgagaattataggctgtttggtttggcg---------------ccacatccaaaa |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
51186610 |
ctgacactttatttcttttcctcgaacaacactattagcaatatttgagaattataggctgtttggtttggcggtggaaaagccaaacccacgtccaaaa |
51186709 |
T |
|
| Q |
386 |
catctactttcatgaaaatccagaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgccactccaaacact |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51186710 |
catctactttcatgaaaatccagaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgccactccaaacaca |
51186809 |
T |
|
| Q |
486 |
ctattagtaattatattgaatcttctttttctattggcttgtttattgctattgagtgtcttagccaatttcccttggatcacttggttgcatgattcac |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51186810 |
ctattagtaattatattgaatcttctttttctattggcttgtttattgctattgagtgtcttagccaatttcccttagatcacttggttgcatgattcat |
51186909 |
T |
|
| Q |
586 |
tcctcctc |
593 |
Q |
| |
|
|||||||| |
|
|
| T |
51186910 |
tcctcctc |
51186917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 48 - 294
Target Start/End: Original strand, 51180713 - 51180958
Alignment:
| Q |
48 |
cttagtttatgtcagtttaatttannnnnnnatgcaccaaaaagatattagcgttgatactttatccattcaatttgtgttgttcta-ttttgccattgt |
146 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51180713 |
cttagtttatgtcagtttaatttatttttttatgcaccaaaaagatattagcgttgatactttatccattcaatttgtgttgttctatttttgccattgt |
51180812 |
T |
|
| Q |
147 |
tctaaatactgtcttttgattttc-tttcaattatcttgcacttcatatggtttcattatctcttatacaaaaacttgctatatttctat-tcctctctc |
244 |
Q |
| |
|
|||||||| | | || || | |||||||| | || | ||||||||||||||||||||||||||| ||||| |||||||||| | |||||| |
|
|
| T |
51180813 |
tctaaatagtaaatactgccttgcacttcaattaacgtg----tggtatggtttcattatctcttatacaaaatcttgccatatttctatgttttctctc |
51180908 |
T |
|
| Q |
245 |
caaatgactgaaatttagttatttgataattgattgtcgaacctaaaata |
294 |
Q |
| |
|
|||||| ||||||||| |||||||||| ||| || || ||||| ||||| |
|
|
| T |
51180909 |
caaatgcttgaaatttaattatttgatagttggttatcaaacctgaaata |
51180958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 374 - 484
Target Start/End: Complemental strand, 41739749 - 41739639
Alignment:
| Q |
374 |
ccacatccaaaacatctactttcatgaaaatccagaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgcc |
473 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||| ||||||||||| || |||||||||| |||| |||||||||||||||| || |||||||||||||| | |
|
|
| T |
41739749 |
ccacgtccaaaacagctactttcgtgaaaatttagaagctttgtatcatagcttttagaatactgtgattccttgccgcacgtgtgataaataaaacgtc |
41739650 |
T |
|
| Q |
474 |
actccaaacac |
484 |
Q |
| |
|
||||||||||| |
|
|
| T |
41739649 |
actccaaacac |
41739639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 484
Target Start/End: Original strand, 12525140 - 12525226
Alignment:
| Q |
398 |
tgaaaatccagaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgccactccaaacac |
484 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||||||| | ||| ||| ||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
12525140 |
tgaaaattcagaaactttgtttcttaacttttaggataccttaatttcttaccgcacgtttgataaataaaacgccgttccaaacac |
12525226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 484
Target Start/End: Complemental strand, 11026825 - 11026749
Alignment:
| Q |
407 |
agaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgccactccaaacac |
484 |
Q |
| |
|
||||||||| |||| ||||||| | || | ||||||| ||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
11026825 |
agaagctttctttcctagctttcacgacaacgtgatttcttgccgcagttttgaaaaataaa-cgccactccaaacac |
11026749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 483
Target Start/End: Complemental strand, 7561342 - 7561248
Alignment:
| Q |
389 |
ctactttcatgaaaatccagaagctttgtttcttagcttttaggataccgtgattccttgccgcaagtttgataaataaaacgccactccaaaca |
483 |
Q |
| |
|
|||||||| ||||||| | |||||||||||| ||| ||||| | | |||||||||||||||||| |||| | ||||| || ||| ||||||||| |
|
|
| T |
7561342 |
ctactttcgtgaaaatagaaaagctttgtttcatagattttacggttccgtgattccttgccgcatgtttaaaaaatacaatgcctctccaaaca |
7561248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University