View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8239_high_2 (Length: 465)
Name: NF8239_high_2
Description: NF8239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8239_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 37168857 - 37169334
Alignment:
| Q |
1 |
aaaaatgtgcatatgtgcatatcgttactaactgtgtctctgcttctatagacattatattgtcattcatcatcaatattttcattccacgaacactatg |
100 |
Q |
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| T |
37168857 |
aaaaatgtgcatatgtgcatatcattattaactgtgtctctgcttctatagatattatattgtcattcatcatcaatattttcattctacgaacactatg |
37168956 |
T |
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| Q |
101 |
tgagggccattgataaacatgtcgtcaaagtaaacatgttttcacacattatactattattgatcctaactttatgcttctccannnnnnnctttcaaca |
200 |
Q |
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| T |
37168957 |
tgagggccattaataaacatgtcgtcaaagtaaacatgttttcacacattata---ttattgatcctaactttatgcttctcctttttttt-ttccaaca |
37169052 |
T |
|
| Q |
201 |
atcctcaaagtaaacatgtcgtcaaggataaagcaaagctaacttgatcaacc---ttacacaatcttctttgtttggccattaataaacactagcagat |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37169053 |
atcctcaaagtaaacatgtcgtcaaggataaagcaaagctaacttgatcaaccaccttacacaatcttctttgtttggccattaataaacactagcagat |
37169152 |
T |
|
| Q |
298 |
gcatgaaaaattactagcaggattgaccgttgaatagttgacttactaaacctttttacagaggcgtttcagtcattatagacaatccctatctcagcct |
397 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37169153 |
gcataaaaaattactagcaggattgaccgttgaatagttgacttactaaacctttttacagaggcgtttcagtcattatagacaatccctatctcagcct |
37169252 |
T |
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| Q |
398 |
g---------------caaaaaacataaaaagcttcacacaccacagtctgtatcacaggctcatgagaataatctacccag |
464 |
Q |
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| T |
37169253 |
gcaaaaaaaataaatacaaaaaacataaaaagcttcacacaccacagtctgtatcacacgctcatgagagtaacctacccag |
37169334 |
T |
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