View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8239_low_3 (Length: 305)
Name: NF8239_low_3
Description: NF8239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8239_low_3 |
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| [»] scaffold0637 (1 HSPs) |
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| [»] scaffold0702 (2 HSPs) |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 51185890 - 51186149
Alignment:
| Q |
16 |
aagaggaggcaatgttgggtgattgtgagtagaatgttagaaggaagagatggatgggctttcaaaaaacctctcgacatcaagtttttgatgggtttag |
115 |
Q |
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| T |
51185890 |
aagaggaggcaatgttgggtgattgtgagtagaatgtttgaaggaagagatggatgggctttcaaaaaacctctcgacatcaagtttttgaagggtttag |
51185989 |
T |
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| Q |
116 |
agaacgagtcaaaggtgaagtcaatgccgaggagtttaaaggatatcgaggccaagttgaagt----tatattcaactccagatgagtttgctgaggata |
211 |
Q |
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| T |
51185990 |
agaacgagtcaaaggtgaagtcaatgccgaggagtttaaaggatatcgaggccaagttgaagttatatatattcaactccagatgagtttgctgaggata |
51186089 |
T |
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| Q |
212 |
tgaggtttgtattatctcatggattgctttacccttggaaggatgaggttcacaaaattg |
271 |
Q |
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| T |
51186090 |
tgaggtttgtattatctcatggattgctttacccttggaaggatgaggttcacaaaattg |
51186149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 271
Target Start/End: Complemental strand, 20692943 - 20692823
Alignment:
| Q |
151 |
ttaaaggatatcgaggccaagttgaagttatattcaactccagatgagtttgctgaggatatgaggtttgtattatctcatggattgctttacccttgga |
250 |
Q |
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| T |
20692943 |
ttaaaagatatcgaagcaaagctgaaattttattcaaaaccggatgagtttgctgaggatatgaggtttgtgttctatcatggatggctttatcctcaaa |
20692844 |
T |
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| Q |
251 |
aggatgaggttcacaaaattg |
271 |
Q |
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| T |
20692843 |
gggatgttgttcacaaaattg |
20692823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 271
Target Start/End: Complemental strand, 20698421 - 20698301
Alignment:
| Q |
151 |
ttaaaggatatcgaggccaagttgaagttatattcaactccagatgagtttgctgaggatatgaggtttgtattatctcatggattgctttacccttgga |
250 |
Q |
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||||| |||||||| || ||| |||| || ||||||| || ||||||||||||||||||||||||||||| || | |||||||| |||||| ||| | |
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| T |
20698421 |
ttaaaagatatcgaagcaaagctgaaattttattcaaaaccggatgagtttgctgaggatatgaggtttgtgttctatcatggatggctttatcctcaaa |
20698322 |
T |
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| Q |
251 |
aggatgaggttcacaaaattg |
271 |
Q |
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| T |
20698321 |
gggatgttgttcacaaaattg |
20698301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 271
Target Start/End: Original strand, 14007386 - 14007506
Alignment:
| Q |
151 |
ttaaaggatatcgaggccaagttgaagttatattcaactccagatgagtttgctgaggatatgaggtttgtattatctcatggattgctttacccttgga |
250 |
Q |
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||||| |||||||| |||||| |||| || |||||| | || || |||||||||||||||||||||||||| || | |||||||| |||||| ||| | |
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| T |
14007386 |
ttaaaagatatcgaagccaagctgaatttttattcatcaccggacgagtttgctgaggatatgaggtttgtgttctatcatggatggctttatcctcaaa |
14007485 |
T |
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| Q |
251 |
aggatgaggttcacaaaattg |
271 |
Q |
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| T |
14007486 |
gggatgttgttcacaaaattg |
14007506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 14007251 - 14007338
Alignment:
| Q |
19 |
aggaggcaatgttgggtgattgtgagtagaatgttagaaggaagagatggatgggctttcaaaaaacctctcgacatcaagtttttga |
106 |
Q |
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| T |
14007251 |
aggatgcaatgttgggcgatagtgagtagaatgataaccggaaaagatggatgggctttgaaaaaccctcttgatctcaagtttttga |
14007338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0637 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0637
Description:
Target: scaffold0637; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 5474 - 5383
Alignment:
| Q |
151 |
ttaaaggatatcgaggccaagttgaagttatattcaactccagatgagtttgctgaggatatgaggtttgtattatctcatggattgcttta |
242 |
Q |
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| T |
5474 |
ttaaaagatatcgaagcaaagctgaaattttattcaataccggatgagtttgctgaggatatgaggtttgtgttctatcatggatggcttta |
5383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 2202 - 2115
Alignment:
| Q |
181 |
tattcaactccagatgagtttgctgaggatatgaggtttgtattatctcatggattgctttacccttggaaggatgaggttcacaaaa |
268 |
Q |
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|||||||| || ||||| |||||||| ||| |||| |||| || ||||||||||| | ||| ||||||||||||| |||||||||| |
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| T |
2202 |
tattcaacacctgatgaatttgctgatgatgtgagacttgttttctctcatggattattatacacttggaaggatgatgttcacaaaa |
2115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 5516 - 5430
Alignment:
| Q |
181 |
tattcaactccagatgagtttgctgaggatatgaggtttgtattatctcatggattgctttacccttggaaggatgaggttcacaaa |
267 |
Q |
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| T |
5516 |
tattcaacacctgatgaatttgctgatgatgtgagacttgttttctctcatggattattatacacttggaaggatgatgttcacaaa |
5430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 35172209 - 35172122
Alignment:
| Q |
181 |
tattcaactccagatgagtttgctgaggatatgaggtttgtattatctcatggattgctttacccttggaaggatgaggttcacaaaa |
268 |
Q |
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|||||||| || ||||| |||||||| ||| |||| |||| || ||||||||||| | ||| ||||||||||||| |||||||||| |
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| T |
35172209 |
tattcaacacctgatgaatttgctgatgatgtgagacttgttttctctcatggattattatacacttggaaggatgatgttcacaaaa |
35172122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 2580 - 2666
Alignment:
| Q |
181 |
tattcaactccagatgagtttgctgaggatatgaggtttgtattatctcatggattgctttacccttggaaggatgaggttcacaaa |
267 |
Q |
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|||||||| || ||||| |||||||| ||| |||| |||| || ||||||||||| | ||| ||||||||||||| ||||||||| |
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| T |
2580 |
tattcaacacctgatgaatttgctgatgatgtgagacttgttttctctcatggattattatacacttggaaggatgatgttcacaaa |
2666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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