View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8239_low_4 (Length: 282)
Name: NF8239_low_4
Description: NF8239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8239_low_4 |
 | |
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| [»] chr8 (9 HSPs) |
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| [»] chr7 (5 HSPs) |
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| [»] chr5 (8 HSPs) |
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| [»] scaffold0440 (1 HSPs) |
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| [»] chr6 (5 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 41949101 - 41949374
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41949101 |
agaacttgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtagtcctgatattgcatatgcagttggcataatcagt |
41949200 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41949201 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
41949300 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41949301 |
gcttaaatgaaaattctattgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
41949374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 30406669 - 30406396
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30406669 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtagacctgatattgcatatgcagttggcataatcagt |
30406570 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30406569 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
30406470 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30406469 |
gcttaaatgaaaattctattgaactgatagcatattctgatgctgattggtgtggagacagacaagatagaaag |
30406396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 43808349 - 43808076
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43808349 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
43808250 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | |
|
|
| T |
43808249 |
agattcatgagtgaaccaagagtctctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggtattctatttcctaaat |
43808150 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
||| ||||| | |||| | || ||||| | ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43808149 |
gcttgaatgatagttctatggaactgatggtatattctgatgctgattggtgtggagacagacaagatagaaag |
43808076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 198550 - 198277
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
198550 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgtaatagtaagcctgatattgcatatgcagttggcataatcagt |
198451 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| |||||||||| | |
|
|
| T |
198450 |
agattcatgagtgaaccaagagtctctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacaatgcagtatggtattctatttcctaaat |
198351 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|| ||||| | |||| | || ||||| | ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
198350 |
gtttgaatgatagttctatggaactgatggtatattctgatgctgattggtgtggagacagacaagatagaaag |
198277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 313387 - 313114
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
313387 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgtaatagtaagcctgatattgcatatgcagttggcataatcagt |
313288 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| |||||||||| | |
|
|
| T |
313287 |
agattcatgagtgaaccaagagtctctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacaatgcagtatggtattctatttcctaaat |
313188 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|| ||||| | |||| | || ||||| | ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
313187 |
gtttgaatgatagttctatggaactgatggtatattctgatgctgattggtgtggagacagacaagatagaaag |
313114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 1290615 - 1290888
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1290615 |
agaacatgtgaatcctacattgttcaagcaaatagttggttcacaaaggtatctatgcaatagtaggcctgatattgcatatgcagttggtataatcagc |
1290714 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
1290715 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagggtgatgagatacatcaaatgaacactgcagtatggcattttatttcctaaat |
1290814 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|| ||||| | |||| | || ||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1290815 |
gtttgaatgatagttctatggaactgatggcatattctaatgttgattggtgtggagacaaacaagatagaaag |
1290888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 29 - 281
Target Start/End: Complemental strand, 31474001 - 31473749
Alignment:
| Q |
29 |
tgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagtagattcatgagtaaaccaag |
128 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| | ||||||| |
|
|
| T |
31474001 |
tgttcaagcaaatagttggatcactaaggtatctatgcaatagtaggcctgatattgcatatgcaattggtataatcagtatattcatgaatgaaccaag |
31473902 |
T |
|
| Q |
129 |
agtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagtacttaaatgaaaattctctt |
228 |
Q |
| |
|
|| |||||| | |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| | | |
|
|
| T |
31473901 |
agcatctcattttctagcaaccaaaagagtgatgagatacatcaaaggaacactgcagtatggcatcctatttcctaagggtttcaatgaaaattttatg |
31473802 |
T |
|
| Q |
229 |
gagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaa |
281 |
Q |
| |
|
| ||||| ||||||||||||| |||||||| ||||||||| || |||||||| |
|
|
| T |
31473801 |
aaactgattgcatattctgatgttgattggtatggagacaagcaggatagaaa |
31473749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 27436036 - 27435851
Alignment:
| Q |
20 |
atcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagtagattcatgag |
119 |
Q |
| |
|
||||||| || ||||| ||||| || || ||||| |||||||||| |||||||||||| ||||||||||||||||| || || || || || |||||||| |
|
|
| T |
27436036 |
atcctacactattcaaacaaattgtgggatcactaaggtatctatacaatagtaggccagatattgcatatgcagtaggaatcataagcaggttcatgag |
27435937 |
T |
|
| Q |
120 |
taaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttccta |
205 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
27435936 |
tgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactagagtttggcattctatttccta |
27435851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 182
Target Start/End: Complemental strand, 17782978 - 17782848
Alignment:
| Q |
49 |
tcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagtagattcatgagtaaaccaagagtatctcacctgctagcag |
148 |
Q |
| |
|
||||| |||||| | ||||||||||||||| |||||| ||||||||| |||| || ||| ||||||| | ||||||||| |||||| ||||||||| |
|
|
| T |
17782978 |
tcactaaggtatttgtgcaatagtaggcctaatattgtttatgcagttagcat---caataggttcatgactgaaccaagagcttctcacttgctagcag |
17782882 |
T |
|
| Q |
149 |
ccaaaagagtgataagatacatcaaaggaacact |
182 |
Q |
| |
|
| ||||||||||| |||||||| || |||||||| |
|
|
| T |
17782881 |
ctaaaagagtgatgagatacattaagggaacact |
17782848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 27760688 - 27760961
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27760688 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcattgaggtatctatgcaatagtagacctgatattgcatatgcagttggcataatcagt |
27760787 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27760788 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
27760887 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27760888 |
gcttaaatgaaaactctattgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
27760961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 7940949 - 7940676
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7940949 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
7940850 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7940849 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
7940750 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7940749 |
gcttaaatgaaaacactattgagctgacagcatattctgatgctgattggtgtggagacagacaagatagaaag |
7940676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 13828971 - 13828718
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||| ||| ||| ||||||| |||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13828971 |
agaacctgtggatcttacattgttcaaagaaattgtgggttcactgaggtatctatgaaatagtaggcctgatattgcatatgcagttggtataatcagt |
13828872 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| || |||||||| ||||||||||| | |
|
|
| T |
13828871 |
agattaatgagtgaaccaagagtatctcatctgctagtagccaaaagagtgatgagatatatcaaaggaacactacattatggcatcttatttcctaaat |
13828772 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtg |
262 |
Q |
| |
|
|| |||||||||||| | || || ||| |||||| ||||| ||||||||||| |
|
|
| T |
13828771 |
gtttgaatgaaaattctatggaactaatatcatattatgatgttgattggtgtg |
13828718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 22580229 - 22580415
Alignment:
| Q |
20 |
atcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagtagattcatgag |
119 |
Q |
| |
|
||||||| |||||||| |||| || || ||||| |||||| ||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||||| |
|
|
| T |
22580229 |
atcctacattgttcaagaaaattgtgggatcactaaggtatttatgcaatagtaggcctgatattgcttatgcagttggtgtaattagtaggttcatgag |
22580328 |
T |
|
| Q |
120 |
taaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaa |
206 |
Q |
| |
|
| ||||||||| |||||| |||||| ||| ||||||||||| ||||||||||| || ||||| | ||||||||||| |||||||| |
|
|
| T |
22580329 |
tgaaccaagagcttctcacttgctagaagctaaaagagtgatgagatacatcaaggggacactagaatatggcattttgtttcctaa |
22580415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 30379902 - 30379942
Alignment:
| Q |
37 |
caaatagttggttcactgaggtatctatgcaatagtaggcc |
77 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
30379902 |
caaattgttggttcactaaggtacctatgcaatagtaggcc |
30379942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 37681327 - 37681600
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37681327 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtagacctgatattgcatatgcagttggcataatcagt |
37681426 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37681427 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
37681526 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37681527 |
gcttaaatgaaaattctattgaactgatagcatattctgatgctgattggtgtggagacagacaagatagaaag |
37681600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 7100240 - 7099967
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7100240 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
7100141 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7100140 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
7100041 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7100040 |
gcttaaatgaaaacactattgagctgacagcatattctgatgctgattggtgtggagacagacaagatagaaag |
7099967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 12022580 - 12022853
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12022580 |
agaacctgtgaatcctacattgttcaagcaaattgtcggttcactgaggtatctatgcaatagtagacctgatattgcatatgcagttggcataatcagt |
12022679 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12022680 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
12022779 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12022780 |
gcttaaatgaaaattctattgaactgatagcatattctgatgctgattggtgtggagacagacaagatagaaag |
12022853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 16797960 - 16798233
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16797960 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
16798059 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16798060 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
16798159 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16798160 |
gcttaaatgaaaacactattgagctgacagcatattctgatgctgattggtgtggagacagacaagatagaaag |
16798233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 26455101 - 26454926
Alignment:
| Q |
31 |
ttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagtagattcatgagtaaaccaagag |
130 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||| ||||||||| ||||||||| |
|
|
| T |
26455101 |
ttcaagcagattgttggatcactaaggtatctatgcaatagtagacctgatattgcatattcagttggtataattagtaggttcatgagtgaaccaagag |
26455002 |
T |
|
| Q |
131 |
tatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaa |
206 |
Q |
| |
|
| ||||| ||||||| || ||||||||||| |||||||||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
26455001 |
tttctcatttgctagctgctaaaagagtgatgagatacatcaaaggaacactagagtatgtcattttgtttcctaa |
26454926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 10276578 - 10276674
Alignment:
| Q |
48 |
ttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagtagattcatgagtaaaccaagagtatctcacctgcta |
144 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10276578 |
ttcactgaggtatctatgcaatagtagacctgatattgcatatgcagttggcataatcagtagattcatgagtgaaccaagagtatctcacctgcta |
10276674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 10276673 - 10276768
Alignment:
| Q |
187 |
tatggcattttatttcctaagtacttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10276673 |
tatgacattttatttcctaagtgcttaaatgaaaattctattgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
10276768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 25632030 - 25632216
Alignment:
| Q |
20 |
atcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagtagattcatgag |
119 |
Q |
| |
|
||||||| |||||||| | || || || |||||||||||| | ||||||| ||||| ||||||||| |||||| ||| ||||| ||||| |||||||| |
|
|
| T |
25632030 |
atcctacattgttcaagaagatggtgggatcactgaggtatttgtgcaatattaggcgtgatattgcttatgcacatggtataattagtaggttcatgag |
25632129 |
T |
|
| Q |
120 |
taaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaa |
206 |
Q |
| |
|
| |||||||| |||||| |||||||||| ||||| || | |||||||| || |||| ||| |||||| ||| || |||||||| |
|
|
| T |
25632130 |
tgaaccaagaacttctcacttgctagcagctaaaagggtcacgagatacattaagggaatactagagtatgacatattgtttcctaa |
25632216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0440 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 6797 - 7070
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6797 |
agaacctgtgaatcctacattattcaagcaaattgttggttcactgaggtatctatgcaatagtagacctgatattgcatatgcagttggcataatcagt |
6896 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6897 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
6996 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6997 |
gcttaaatgaaaattctattgaactgatagcatattctgatgctgattggtgtggagacagacaagatagaaag |
7070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 8316370 - 8316097
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316370 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
8316271 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8316270 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
8316171 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8316170 |
gcttaaatgaaaacactattgagctgacagcatattctgatgctgattggtgtggagacagacaagatagaaag |
8316097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 27569049 - 27568776
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27569049 |
agaacgtgtgaatcctacattgttcaagcaaatagttggttcactgaggtatctatgcaatagtagacctgatattgcatatgcagttggcataatcagt |
27568950 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
27568949 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactacagtatgacattttatttcctaagt |
27568850 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27568849 |
gcttaaatgaaaattctattgagctgatagcatattatgatgctgattggtgtggagacaaacaagatagaaag |
27568776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 3596021 - 3596206
Alignment:
| Q |
20 |
atcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagtagattcatgag |
119 |
Q |
| |
|
||||||| |||||||||| || || || ||||| |||||| | ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
3596021 |
atcctacattgttcaagcatattgtgggatcactaaggtatatgtgcaatagtagacctgatattgcatatgcagttggtataatcagacgattcatgag |
3596120 |
T |
|
| Q |
120 |
taaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaa |
206 |
Q |
| |
|
| ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
3596121 |
tgaaccaagagcatctcacctgctagcagctaaaagagtgatgagatacatcaaaggaacactagagtat-gcattttgtttcctaa |
3596206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 182 - 282
Target Start/End: Complemental strand, 17887538 - 17887438
Alignment:
| Q |
182 |
tgcagtatggcattttatttcctaagtacttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaa |
281 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17887538 |
tgcagtatggcattttatttcctaagtgcttaaatgaaaattctattgagctgatatcatattctgatgctgattggtgtggagacaaacaagatagaaa |
17887439 |
T |
|
| Q |
282 |
g |
282 |
Q |
| |
|
| |
|
|
| T |
17887438 |
g |
17887438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 173
Target Start/End: Original strand, 23255807 - 23255931
Alignment:
| Q |
49 |
tcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagtagattcatgagtaaaccaagagtatctcacctgctagcag |
148 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||||||| |||||| |||||||||| || | ||| ||||| ||||||||| |||||| ||| ||||| |
|
|
| T |
23255807 |
tcactgaggtatttgtgcaatagaaggcctgatattgcttatgcacttggcataattagcatgttcgtgagtgaaccaagagcttctcacttgcaagcag |
23255906 |
T |
|
| Q |
149 |
ccaaaagagtgataagatacatcaa |
173 |
Q |
| |
|
| ||||| ||||| ||||||||||| |
|
|
| T |
23255907 |
ctaaaagggtgatgagatacatcaa |
23255931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 54168210 - 54167937
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54168210 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
54168111 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54168110 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
54168011 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54168010 |
gcttaaatgaaaacactattgagctgacagcatattctgatgctgattggtgtggagacagacaagatagaaag |
54167937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 21849490 - 21849763
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21849490 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
21849589 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | |
|
|
| T |
21849590 |
agattcatgagtgaaccaagagtctctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggtattctatttcctaaat |
21849689 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|| ||||| | |||| | || ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21849690 |
gtttgaatgatagttctatggaactgatggcatattctgatgctgattggtgtggagacagacaagatagaaag |
21849763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 53353837 - 53353575
Alignment:
| Q |
20 |
atcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagtagattcatgag |
119 |
Q |
| |
|
||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53353837 |
atcctacattgttcaagcaaattgtaggttcactgaggtatctatgcaatagtaggcttgatattgcatatgcagttggtataatcagtagattcatgag |
53353738 |
T |
|
| Q |
120 |
taaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagtacttaaatgaa |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||| |||||||||| | || ||||| |
|
|
| T |
53353737 |
tgaaccaagagtatctcacctgctagcagccaaaagggtgatgagatacatcaaaggaacactacagtatggtattctatttcctaaatgtttgaatgat |
53353638 |
T |
|
| Q |
220 |
aattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
| |||| | || ||||| |||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
53353637 |
agttctatggaactgatggcatattctgatgctgattggtgtggagacaagcaggatagaaag |
53353575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 43553585 - 43553856
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43553585 |
agaacatgtgagtcctacattgttcaagcaaatagttggttcactgaggtatttatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
43553684 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||| ||||| || |||||||||| | |
|
|
| T |
43553685 |
ggattcatgagtgaacca--agtatctcacctgctagtagccaaaagagtggtgagatacatcaaaggaacactgcaatatggtatcctatttcctaaat |
43553782 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|| ||||| | |||| | || ||||| ||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
43553783 |
gtttgaatgatagttctatggaactgatggcatattctgatgctgattggtgtggagacaaataggatagaaag |
43553856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 36674342 - 36674615
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36674342 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
36674441 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36674442 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
36674541 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36674542 |
gcttaaatgaaaacactattgagctgacagcatattctgatgctgattggtgtggagacagacaagatagaaag |
36674615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 35951304 - 35951031
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35951304 |
agaacctgtgaatcctacattgttcaagcaaatagttggttcactgaggtatctatgcaatagtagacctgatattgcatatgcagttggcataatcagt |
35951205 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35951204 |
agattcatgagtgaaccaagagtatctcacctactagcagccaaaagaatgatgagatatatcaaaggaacactgcagtatggcattttatttcctaagt |
35951105 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
35951104 |
gcttaaatgaaaattctattgatctgatagcatattctgatgttgattggtgtggagacattcaagatagaaag |
35951031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 8054683 - 8054956
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8054683 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
8054782 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | |
|
|
| T |
8054783 |
agattcatgagtgaaccaagagtctctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggtattctatttcctaaat |
8054882 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|| ||||| | |||| | || ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8054883 |
gtttgaatgatagttctatggaactgatggcatattctgatgctgattggtgtggagacagacaagatagaaag |
8054956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 26315304 - 26315577
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26315304 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
26315403 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26315404 |
agattcatgagtgaaccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
26315503 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26315504 |
gcttaaatgaaaacactattgagctgacagcatattctgatgctgattggtgtggagacagacaagatagaaag |
26315577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 43592686 - 43592414
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| | |||| |||||||||||||||| ||||||||||| |
|
|
| T |
43592686 |
agaacctgtgaatcctacattgttcaagcaaatagttggttcaccgaggtatttatgcaatagtcgacctgctattgcatatgcagttagcataatcagt |
43592587 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43592586 |
agattcatgagtgaaccaagagtatctcacctgctagcagacaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttattt-ctaagt |
43592488 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||||| | ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43592487 |
gcttaaatgaaaattatattgagttgatagcatattataatgctgattggtgtggagacaaacaagatagaaag |
43592414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 30646736 - 30646841
Alignment:
| Q |
88 |
tatgcagttggcataatcagtagattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagt |
187 |
Q |
| |
|
|||||| |||||||| |||||||||| |||||| ||||||||| |||||||| | ||||| ||||| ||||||||||||||||| ||||| || ||| |
|
|
| T |
30646736 |
tatgcaattggcata-tcagtagatttatgagtgaaccaagagcttctcacctaattgcagctaaaagggtgataagatacatcaagggaactatggagt |
30646834 |
T |
|
| Q |
188 |
atggcat |
194 |
Q |
| |
|
||||||| |
|
|
| T |
30646835 |
atggcat |
30646841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 36 - 282
Target Start/End: Complemental strand, 8893460 - 8893214
Alignment:
| Q |
36 |
gcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagtagattcatgagtaaaccaagagtatct |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8893460 |
gcaaatagttggttcactgaggtatctatgcaatagtagacctgatattgcatatgcagttggcataatcagtagattcatgagtgaaccaagagtatct |
8893361 |
T |
|
| Q |
136 |
cacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagtacttaaatgaaaattctcttgagctga |
235 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||| |
|
|
| T |
8893360 |
cacctgccagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggcattttattttctaagtgcttaaataaaaattctattgagctga |
8893261 |
T |
|
| Q |
236 |
tagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8893260 |
tagcatattctgatgttgattggtgtggagacaaacaagatagaaag |
8893214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 31358451 - 31358716
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31358451 |
agaacctgtgaatccaacattgttcaagcaaatagttggttcactaaggtatctatacaatagtatgcctgatattgcatatgcagttggcataatcagt |
31358550 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31358551 |
agattca--------ccaagagtatctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatgacattttatttcctaagt |
31358642 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31358643 |
gcttaaatgaaaattctattgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
31358716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 50628797 - 50628523
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| | |||| | |||||||||| ||||||| |||||||||||||| |
|
|
| T |
50628797 |
agaacctgtgaatcctacacttttcaagcaaatagttggttcactgaagtatctatgtagtagttgacctgatattgtatatgcaattggcataatcagt |
50628698 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50628697 |
agattcatgagtgaaccaaaagtatctcacctactagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatgacattttatttcctaagt |
50628598 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcata-ttctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50628597 |
ggttaaatgaaaattctattgagctgataacatatttttgatgctgattggtgtggagacaaacaagatagaaag |
50628523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 44150849 - 44151122
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44150849 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgtaatagtaggcctgatattgcatatgcagttggcataatcagt |
44150948 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | |
|
|
| T |
44150949 |
agattcatgagtgaaccaagagtctctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggtattctatttcctaaat |
44151048 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|| ||||| | |||| | || ||||| | ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44151049 |
gtttgaatgatagttctatggaactgatggtatattctgatgctgattggtgtggagacagacaagatagaaag |
44151122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 29258005 - 29258182
Alignment:
| Q |
29 |
tgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagtagattcatgagtaaaccaag |
128 |
Q |
| |
|
||||||||||||| || || ||||| ||||||| |||||||||| ||| ||||||| ||||||||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
29258005 |
tgttcaagcaaattgtgggatcactaaggtatcagtgcaatagtaaaccttatattgcttatgcagttggtataatcagtaggttcatgagtgaaccaag |
29258104 |
T |
|
| Q |
129 |
agtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaa |
206 |
Q |
| |
|
|| |||||| |||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
29258105 |
agcttctcacttgctagcagctaaaagagtgatgagatacatcaagggaacactatagtatggcattttgtttcctaa |
29258182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 45731 - 45458
Alignment:
| Q |
9 |
agaacctgtgaatcctactctgttcaagcaaatagttggttcactgaggtatctatgcaatagtaggcctgatattgcatatgcagttggcataatcagt |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45731 |
agaacctgtgaatcctacattgttcaagcaaattgttggttcactgaggtatctatgtaatagtaggcctgatattgcatatgcagttggcataatcagt |
45632 |
T |
|
| Q |
109 |
agattcatgagtaaaccaagagtatctcacctgctagcagccaaaagagtgataagatacatcaaaggaacactgcagtatggcattttatttcctaagt |
208 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | |
|
|
| T |
45631 |
agattcatgagtgaaccaagagtctctcacctgctagcagccaaaagagtgatgagatacatcaaaggaacactgcagtatggtattctatttcctaaat |
45532 |
T |
|
| Q |
209 |
acttaaatgaaaattctcttgagctgatagcatattctgatgctgattggtgtggagacaaacaagatagaaag |
282 |
Q |
| |
|
|| ||||| | |||| | || ||||| | ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45531 |
gtttgaatgatagttctatggaactgatggtatattctgatgctgattggtgtggagacagacaagatagaaag |
45458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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