View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8239_low_5 (Length: 243)
Name: NF8239_low_5
Description: NF8239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8239_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 51303133 - 51302912
Alignment:
| Q |
1 |
tttgctattctgattatcttgcttgcatcaacctt--atatgatcccattaagaggttccatatttatgttgttatcatataagacataaaacaaatgct |
98 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51303133 |
tttgatattctgattatcttgcttgcatcaaccttgtatatgaccccattaagaggttccatatttatgttgttatcatacaagacataaaacaaatgct |
51303034 |
T |
|
| Q |
99 |
tcatcaaatcaatgtaacagtttcccacactctt-agagaggagaatcaatgtgcagactatatgacaaaactttgcgcttcttatgatgttgagtttct |
197 |
Q |
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||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
51303033 |
tcatcaactcaatgtaacggtttctcacactcttaagagaggagaatcaatgtgcagactatatgacaaagcttgaagcttcttatgatgttgagtttct |
51302934 |
T |
|
| Q |
198 |
gcttcatgattccccctgctgg |
219 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
51302933 |
gcttcatgattccccctgctgg |
51302912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 5204102 - 5203941
Alignment:
| Q |
2 |
ttgctattctgattatcttgcttgcatcaaccttatat--gatcccattaagaggttccatatttatgttgttatcatataagacataaaacaaatgctt |
99 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| | |||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |
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| T |
5204102 |
ttgctattctgattctcttgcttgcatcaaccttatatatggccccattgagaggttccatatctatgctgttatcatacaagacataaaacaaatgctt |
5204003 |
T |
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| Q |
100 |
catcaaatcaatgtaacagtttcccacactcttagagaggagaatcaatgtgcagactatat |
161 |
Q |
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| T |
5204002 |
caacaaatcaatgtaacggtttctcacactcttagagaggggaatcaatgtgcaaactatat |
5203941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 167
Target Start/End: Complemental strand, 10484169 - 10484002
Alignment:
| Q |
2 |
ttgctattctgattatcttgcttgcatcaaccttat--atgatcccattaagaggttccatatttatgttgttatcatataagacataaaacaaatgctt |
99 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| ||| ||||||| |||| | |||||| | ||||||| |||| |||| ||||||| ||||||| |
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| T |
10484169 |
ttgctattctgattctcttgcttgtatcaaccttattaatggtcccattgagagataccatatctctgttgttctcatccaagagataaaaccaatgctt |
10484070 |
T |
|
| Q |
100 |
catcaaatcaatgtaacagtttcccacactcttagagaggagaatcaatgtgcagactatatgacaaa |
167 |
Q |
| |
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|| |||||||||| |||| |||| |||||||||||||| | ||| || || |||||||| ||| |||| |
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| T |
10484069 |
caacaaatcaatgcaacaatttctcacactcttagagaagggaaccattgggcagactacatggcaaa |
10484002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 10470243 - 10470080
Alignment:
| Q |
2 |
ttgctattctgattatcttgcttgcatcaaccttat--atgatcccattaagaggttccatatttatgttgttatcatataagacataaaacaaatgctt |
99 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| ||| |||||| ||| | |||||| ||||| ||| |||| |||| ||||||||||||||| |
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| T |
10470243 |
ttgctattctgattctcttgcttgcgtcaaccttattaatggtcccatcgtgagataccatatctatgtggttctcatccaagagataaaacaaatgctt |
10470144 |
T |
|
| Q |
100 |
catcaaatcaatgtaacagtttcccacactcttagagaggagaatcaatgtgcagactatatga |
163 |
Q |
| |
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|| |||| |||| ||| ||||| |||||||||||||||| ||| || ||||||||||| |||| |
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|
| T |
10470143 |
caacaaaccaatccaacggtttctcacactcttagagaggggaaccattgtgcagactacatga |
10470080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 40789319 - 40789419
Alignment:
| Q |
67 |
gttgttatcatataagacataaaacaaatgcttcatcaaatcaatgtaacagtttcccacactcttagagaggagaatcaatgtgcagactatatgacaa |
166 |
Q |
| |
|
|||||| |||||| |||||| |||||| | ||||| |||| |||| |||| ||||| | |||||||||||||| ||| || ||||||||||| ||| ||| |
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| T |
40789319 |
gttgttctcatatgagacatgaaacaatttcttcaacaaaccaatctaacggtttctcgcactcttagagaggggaaccattgtgcagactacatggcaa |
40789418 |
T |
|
| Q |
167 |
a |
167 |
Q |
| |
|
| |
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|
| T |
40789419 |
a |
40789419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 191
Target Start/End: Original strand, 38224614 - 38224741
Alignment:
| Q |
64 |
tatgttgttatcatataagacataaaacaaatgcttcatcaaatcaatgtaacagtttcccacactcttagagaggagaatcaatgtgcagactatatga |
163 |
Q |
| |
|
||||||||| |||| |||||||||| ||| ||||||| || | || ||||| ||||| ||||||||||||||| | ||||| |||||||||| ||| |
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| T |
38224614 |
tatgttgttctcatcaaagacataaagcaattgcttcaccataccagcgtaacggtttctcacactcttagagagaaaaatcagtgtgcagacttaatgg |
38224713 |
T |
|
| Q |
164 |
caaaactttgcgcttcttatgatgttga |
191 |
Q |
| |
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|||| ||| | ||||||| |||| |||| |
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| T |
38224714 |
caaagcttagagcttcttctgatattga |
38224741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40789096 - 40789132
Alignment:
| Q |
1 |
tttgctattctgattatcttgcttgcatcaaccttat |
37 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||| |
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| T |
40789096 |
tttgctattctgattctcttgcttgcatcaactttat |
40789132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 167
Target Start/End: Complemental strand, 35061070 - 35060903
Alignment:
| Q |
2 |
ttgctattctgattatcttgcttgcatcaaccttat--atgatcccattaagaggttccatatttatgttgttatcatataagacataaaacaaatgctt |
99 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||| ||||||| | |||| |||||| || ||||| |||| |||||||||||||||||||| |
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| T |
35061070 |
ttgctattctgattctcttgcttgcatcaaccttattaatggtcccattgaaaggtaccatatctacattgttctcatccaagacataaaacaaatgctt |
35060971 |
T |
|
| Q |
100 |
catcaaatcaatgtaacagtttcccacactcttagagaggagaatcaatgtgcagactatatgacaaa |
167 |
Q |
| |
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|| |||| ||||||||||||||| ||||||||||||||| ||| || |||||| |||| ||| |||| |
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| T |
35060970 |
caacaaaccaatgtaacagtttctcacactcttagagagaggaaccattgtgcaaactacatggcaaa |
35060903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 3276055 - 3276153
Alignment:
| Q |
116 |
cagtttcccacactcttagagaggagaatcaatgtgcagactatatgacaaaactttgcgcttcttatgatgttgagtttctgcttcatgattccccct |
214 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||| | ||||||| ||||||||| |||| |||||||||| ||||| |
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| T |
3276055 |
cagtttctcacacttttagagaggagaatcaatgtgcagattatatggcaaaacttggagcttcttctgatgttgaacttcttcttcatgatttcccct |
3276153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 29339734 - 29339793
Alignment:
| Q |
80 |
aagacataaaacaaatgcttcatcaaatcaatgtaacagtttcccacactcttagagagg |
139 |
Q |
| |
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|||||||||||||| |||| || ||||||||||| || ||||| ||| |||||||||||| |
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| T |
29339734 |
aagacataaaacaattgctccaccaaatcaatgtgacggtttctcacgctcttagagagg |
29339793 |
T |
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