View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8239_low_6 (Length: 229)
Name: NF8239_low_6
Description: NF8239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8239_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 20665959 - 20666164
Alignment:
| Q |
1 |
aaagtagtggcaatgttaacaacaaattcttataattaacacattttcagcgaactcacttgtcagaaccagaagaggatcctttgttctcatcaaccaa |
100 |
Q |
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| T |
20665959 |
aaagtagtggcaatgttaacaacaaattcttataattaacacattttcagcgaactcacttgtcagaaccagaagaggatcctttgttctcatcaaccaa |
20666058 |
T |
|
| Q |
101 |
gttaatcacaaaaaccttcgaagtaaagggtaaaggaccagcagtatacagactcttcctcccatcataagcaggaatgcgattcccaagcatggactct |
200 |
Q |
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| T |
20666059 |
gttaatcacaaaaaccttcgaagtaaagggtaaaggaccagcagtaaacagactcttcctcccatcataagcaggaatgcgattcccaagcatggactct |
20666158 |
T |
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| Q |
201 |
tggtgc |
206 |
Q |
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|||||| |
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| T |
20666159 |
tggtgc |
20666164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 20690351 - 20690495
Alignment:
| Q |
43 |
attttcagcgaactcacttgtcagaaccagaagaggatcctttgttctcatcaaccaagttaatcacaaaaaccttcgaagtaaagggtaaaggaccagc |
142 |
Q |
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|||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
20690351 |
atttacagcaaactcacgtgtcagaaccagaagaggatcctttgttctcatcaaccaagttaatcacaaaaaccttcgacgtaaatggtaatggaccagc |
20690450 |
T |
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| Q |
143 |
agtatacagactcttcctcccatcataagcaggaatgcgattccc |
187 |
Q |
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|||| |||||||||| ||||||||||| |||||||| | |||||| |
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| T |
20690451 |
agtaaacagactctttctcccatcataggcaggaatcctattccc |
20690495 |
T |
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