View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8240_high_2 (Length: 414)

Name: NF8240_high_2
Description: NF8240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8240_high_2
NF8240_high_2
[»] chr8 (19 HSPs)
chr8 (83-402)||(43488908-43489227)
chr8 (85-255)||(42366190-42366361)
chr8 (13-68)||(29259930-29259985)
chr8 (135-338)||(14061611-14061815)
chr8 (135-186)||(39038938-39038989)
chr8 (13-68)||(40264936-40264991)
chr8 (108-245)||(10127684-10127824)
chr8 (16-68)||(41386525-41386577)
chr8 (13-68)||(2113170-2113225)
chr8 (13-68)||(41965235-41965290)
chr8 (13-68)||(41965456-41965511)
chr8 (13-68)||(43605023-43605078)
chr8 (13-51)||(10796026-10796064)
chr8 (140-256)||(8502779-8502896)
chr8 (13-68)||(9457886-9457941)
chr8 (371-407)||(9209033-9209069)
chr8 (194-257)||(17790581-17790645)
chr8 (139-187)||(24296471-24296519)
chr8 (135-223)||(24318097-24318185)
[»] chr4 (18 HSPs)
chr4 (13-402)||(56397445-56397838)
chr4 (80-347)||(42314955-42315223)
chr4 (94-338)||(38230837-38231082)
chr4 (135-338)||(28100397-28100601)
chr4 (135-346)||(53271966-53272178)
chr4 (135-338)||(37370702-37370906)
chr4 (13-68)||(44930254-44930309)
chr4 (143-255)||(53594234-53594347)
chr4 (274-338)||(1848482-1848546)
chr4 (13-65)||(3435628-3435680)
chr4 (135-187)||(5117179-5117231)
chr4 (13-68)||(42218099-42218154)
chr4 (274-312)||(20539023-20539061)
chr4 (371-407)||(8584056-8584092)
chr4 (371-403)||(26336078-26336110)
chr4 (135-250)||(41762131-41762247)
chr4 (286-350)||(44646774-44646838)
chr4 (371-407)||(54509711-54509747)
[»] chr2 (15 HSPs)
chr2 (80-402)||(21736365-21736687)
chr2 (80-355)||(35172398-35172675)
chr2 (80-407)||(7487890-7488216)
chr2 (85-338)||(36598233-36598486)
chr2 (85-255)||(14920391-14920559)
chr2 (119-255)||(16146971-16147108)
chr2 (119-338)||(16155475-16155694)
chr2 (135-257)||(15284341-15284466)
chr2 (135-247)||(18176284-18176397)
chr2 (13-68)||(6289162-6289217)
chr2 (13-68)||(29941325-29941380)
chr2 (227-257)||(2288604-2288634)
chr2 (289-338)||(43022570-43022619)
chr2 (139-187)||(24935957-24936005)
chr2 (135-187)||(43022654-43022705)
[»] chr5 (13 HSPs)
chr5 (80-407)||(3604214-3604540)
chr5 (94-338)||(378298-378543)
chr5 (135-255)||(28594256-28594377)
chr5 (135-338)||(2276020-2276224)
chr5 (209-338)||(26806465-26806595)
chr5 (289-350)||(26806667-26806728)
chr5 (209-338)||(26795401-26795531)
chr5 (135-244)||(27786362-27786472)
chr5 (289-350)||(26795603-26795664)
chr5 (13-68)||(3604124-3604179)
chr5 (13-68)||(13950451-13950506)
chr5 (13-68)||(40410969-40411024)
chr5 (108-177)||(26630239-26630308)
[»] chr7 (20 HSPs)
chr7 (80-402)||(12253152-12253473)
chr7 (80-402)||(33474520-33474845)
chr7 (135-247)||(42678008-42678121)
chr7 (95-340)||(46037115-46037371)
chr7 (135-254)||(3634353-3634473)
chr7 (13-68)||(152231-152286)
chr7 (113-255)||(37042357-37042499)
chr7 (13-68)||(43057330-43057385)
chr7 (80-128)||(30890163-30890211)
chr7 (135-187)||(32630915-32630967)
chr7 (13-68)||(33474862-33474917)
chr7 (13-68)||(47913985-47914040)
chr7 (130-187)||(34115282-34115340)
chr7 (133-187)||(48399906-48399960)
chr7 (15-68)||(30111181-30111234)
chr7 (139-187)||(36355303-36355351)
chr7 (13-51)||(47912630-47912668)
chr7 (289-338)||(34115443-34115492)
chr7 (8-68)||(12253067-12253127)
chr7 (274-350)||(42678149-42678225)
[»] chr3 (30 HSPs)
chr3 (80-402)||(23697007-23697331)
chr3 (80-402)||(23715462-23715787)
chr3 (80-402)||(23733918-23734243)
chr3 (80-355)||(85798-86075)
chr3 (80-261)||(23753724-23753906)
chr3 (276-402)||(23752376-23752501)
chr3 (130-338)||(44041854-44042064)
chr3 (13-68)||(23697351-23697406)
chr3 (13-68)||(23715807-23715862)
chr3 (13-68)||(23734263-23734318)
chr3 (13-68)||(23753927-23753982)
chr3 (135-340)||(44701607-44701811)
chr3 (274-338)||(10225624-10225688)
chr3 (13-68)||(24150488-24150543)
chr3 (13-68)||(30589215-30589270)
chr3 (209-338)||(10104782-10104912)
chr3 (280-338)||(12103363-12103421)
chr3 (289-350)||(10104984-10105045)
chr3 (15-68)||(36054660-36054713)
chr3 (13-65)||(26293224-26293276)
chr3 (135-187)||(45215216-45215268)
chr3 (13-68)||(19551818-19551872)
chr3 (13-68)||(26005514-26005569)
chr3 (371-405)||(27593151-27593185)
chr3 (13-51)||(38629456-38629494)
chr3 (289-338)||(10216131-10216180)
chr3 (289-338)||(10225760-10225809)
chr3 (290-338)||(10055755-10055803)
chr3 (371-403)||(26293618-26293650)
chr3 (275-335)||(46749319-46749379)
[»] chr1 (18 HSPs)
chr1 (80-255)||(39758120-39758295)
chr1 (80-255)||(39763474-39763649)
chr1 (94-338)||(48194655-48194900)
chr1 (93-257)||(19007343-19007518)
chr1 (85-256)||(43553682-43553853)
chr1 (94-338)||(48203413-48203658)
chr1 (274-338)||(4288998-4289062)
chr1 (13-68)||(45318841-45318896)
chr1 (135-255)||(27198419-27198540)
chr1 (289-350)||(39758033-39758094)
chr1 (289-350)||(39763387-39763448)
chr1 (13-65)||(26882478-26882530)
chr1 (135-187)||(51826651-51826703)
chr1 (13-68)||(45535131-45535186)
chr1 (13-68)||(52705765-52705820)
chr1 (280-346)||(28039368-28039434)
chr1 (135-224)||(4289113-4289202)
chr1 (281-338)||(19007541-19007598)
[»] scaffold0472 (1 HSPs)
scaffold0472 (135-247)||(1700-1813)
[»] chr6 (12 HSPs)
chr6 (94-338)||(7100229-7100474)
chr6 (94-338)||(8794156-8794401)
chr6 (135-257)||(5957275-5957398)
chr6 (93-257)||(709060-709235)
chr6 (13-68)||(29865404-29865459)
chr6 (286-350)||(31609659-31609723)
chr6 (286-333)||(10009605-10009652)
chr6 (280-338)||(708980-709038)
chr6 (130-187)||(31609502-31609560)
chr6 (280-333)||(4653368-4653421)
chr6 (15-68)||(6476368-6476421)
chr6 (194-257)||(4653444-4653508)
[»] scaffold0287 (1 HSPs)
scaffold0287 (135-254)||(11612-11732)
[»] scaffold0237 (1 HSPs)
scaffold0237 (13-68)||(21099-21154)
[»] scaffold0153 (1 HSPs)
scaffold0153 (13-51)||(34469-34507)
[»] scaffold0016 (1 HSPs)
scaffold0016 (13-51)||(81437-81475)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 83 - 402
Target Start/End: Complemental strand, 43489227 - 43488908
Alignment:
Q  83 gaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccatta 182  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43489227 gaagagtattacaaaatctcaagagtttgtgtgagattgttagatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccatta 43489128  T
Q  183 aaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaat 281  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||        ||||||||    
T  43489127 aaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaataccaacggattttgatgtcttgaaaaaaaagtcttaat 43489028  T
Q  282 tgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagattttcttttnnnnnnnnnnttctattaaaatcctt 381  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||           |||||||||||||||    
T  43489027 tgtcttgattgaatactacaagatttatttagattccataaaagtcttgattcaatacctcaagattttcttttcataaaaaag-tctattaaaatcctt 43488929  T
Q  382 tgaaatctcaattcaatacac 402  Q
    |||||| ||||||||||||||    
T  43488928 tgaaatttcaattcaatacac 43488908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 85 - 255
Target Start/End: Complemental strand, 42366361 - 42366190
Alignment:
Q  85 agagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaa 184  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  42366361 agagtatcacaaaatctcaagagtttgtgtgagattgttagatgagtctattttaactaaaaagtctcacacaatctattccacaaatgaatccattaaa 42366262  T
Q  185 atccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattt 255  Q
    ||| |||||||||||||||||| ||||||||||||||| || ||||||||| || |||||||||||| ||||    
T  42366261 atctgtctaattttcaataccaagagacattttataagttcctagaaatctcaaatgaataccaacgaattt 42366190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 29259930 - 29259985
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  29259930 aaaatatataacctgccattgttacaatagaacagaaaagaatttggaagaaacgt 29259985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 338
Target Start/End: Complemental strand, 14061815 - 14061611
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagtcttagaaa-tc 233  Q
    ||||| ||||||||||||||| |||||| | || ||| ||||||||||||||  || || |||| |||||||  ||||||||||||||||    ||| ||    
T  14061815 ttttagctaaaaagtctcacaaaatccactctataaaagaatccattaaaatttgtatacttttgaataccaacagacattttataagtcggccaaagtc 14061716  T
Q  234 ttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgatt 333  Q
    | | |||||||||| || |||| | ||   ||        ||||| ||||| |||||||||||| |||||||||||||| |||| |||||| ||||||||    
T  14061715 tcatttgaataccaccgaatttcgttgcactgaataaaaagtcttgattgtcttgattgaataccacaagatttatttatattctataaaaatcttgatt 14061616  T
Q  334 caata 338  Q
     ||||    
T  14061615 gaata 14061611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 39038938 - 39038989
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaat 186  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  39038938 ttttaactaaaaagtctcacaaaattcattatacaaaagaatccattaaaat 39038989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 40264936 - 40264991
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  40264936 aaaatatataacctgccattgttacagtagaacagaaaagaatttggaagaaacgt 40264991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 10127824 - 10127684
Alignment:
Q  108 tttgtgtgagattgttggatgagtgtattttaacta-aaaagtctcacacaatccattatacaaatgaatccattaaaatc-cgtctaattttcaatacc 205  Q
    ||||| |||||||||||  ||| ||||||||||||| |||| |||| || ||||||||| || || |||||| || ||||| | | || |||||||||||    
T  10127824 tttgtatgagattgttgagtgaatgtattttaactaaaaaaatctctcaaaatccattacactaaagaatccttttaaatctcttgtatttttcaatacc 10127725  T
Q  206 acgagacattttataagt-cttagaaatcttaattgaatac 245  Q
    |  ||||||||||||||| || | ||||||| |||||||||    
T  10127724 aatagacattttataagtcctaacaaatcttgattgaatac 10127684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 41386525 - 41386577
Alignment:
Q  16 atatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    ||||||||||||| ||||||||||||||||||||||   ||||||||||||||    
T  41386525 atatataacctgcgattgttacaatagaacagaaaagaatttggaagaaacgt 41386577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 2113225 - 2113170
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||| ||||| |||| |||||||  |||||||||||||||    
T  2113225 aaaatatataacctgccattattacagtagagcagaaaagattttggaagaaacgt 2113170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 41965235 - 41965290
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||||| ||||||||||||   ||||||| ||||||    
T  41965235 aaaatatataacctgccattgttacattagaacagaaaagaatttggaataaacgt 41965290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 41965456 - 41965511
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||| ||||| ||||||||||||   ||||||||||||||    
T  41965456 aaaatatataacctgccatttttacagtagaacagaaaagaatttggaagaaacgt 41965511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 43605023 - 43605078
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||||| ||||||| ||||   ||||||||||||||    
T  43605023 aaaatatataacctgccattgttacagtagaacaaaaaagaatttggaagaaacgt 43605078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 10796026 - 10796064
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaa 51  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  10796026 aaaatatataacctgccattgttacagtagaacagaaaa 10796064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 8502896 - 8502779
Alignment:
Q  140 actaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaat 238  Q
    |||||||||||||| | |||||||||  || |  |||||||||||||||||  |||||| |||||||  ||||| ||| |||| | |   ||||||||||    
T  8502896 actaaaaagtctcataaaatccattactcacaacaatccattaaaatccgtagaattttaaataccaatagacaatttttaagttgtgcaaaatcttaat 8502797  T
Q  239 tgaataccaacggatttt 256  Q
    ||||||||| ||||||||    
T  8502796 tgaataccaccggatttt 8502779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 9457941 - 9457886
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||| ||||||||||||||  ||||||||||||   ||||||||||||||    
T  9457941 aaaatatatatcctgccattgttacggtagaacagaaaagaatttggaagaaacgt 9457886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 9209069 - 9209033
Alignment:
Q  371 ttaaaatcctttgaaatctcaattcaatacactcctt 407  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  9209069 ttaaaattctttgaaatctcaattcaatacacccctt 9209033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 17790645 - 17790581
Alignment:
Q  194 attttcaataccacgagacattttataagtcttag-aaatcttaattgaataccaacggattttg 257  Q
    ||||| |||||||  |||||||||||||||| ||  ||||||| ||||||||||||| |||||||    
T  17790645 atttttaataccaatagacattttataagtcctaacaaatcttgattgaataccaacagattttg 17790581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 24296471 - 24296519
Alignment:
Q  139 aactaaaaagtctcacacaatccattatacaaatgaatccattaaaatc 187  Q
    ||||||||||||| ||| |||||||| ||| || |||||||||||||||    
T  24296471 aactaaaaagtcttacaaaatccattctaccaaagaatccattaaaatc 24296519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 24318185 - 24318097
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagt 223  Q
    ||||||| ||||||||||||| ||||||||  | ||| |||||||| ||||||  || | |||| ||||||   |||||||||||||||    
T  24318185 ttttaaccaaaaagtctcacaaaatccattccataaaagaatccatcaaaatctatcaatttttgaataccgaaagacattttataagt 24318097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 56397838 - 56397445
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgtnnnnnnnnnnn----ttggaagagtattacaaaatttcaagagt 108  Q
    ||||||||||||||||||||||| || ||||||||||||   ||||||||||||||               |||||||||||||||||||| ||||||||    
T  56397838 aaaatatataacctgccattgttgcagtagaacagaaaagaatttggaagaaacgtaaaaaaaataaaaatttggaagagtattacaaaatctcaagagt 56397739  T
Q  109 ttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  56397738 ttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatccattaaaatccgtctaattttcaataccacg 56397639  T
Q  209 agacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattgaatactacaagattt 307  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||        |||||| ||||||||||||||||| |||| ||||    
T  56397638 agacatgttataagttcttagaaatcttaattgaataccaacggattttgatgtcttgaaaaaaaagtcttagttgttttgattgaataccacaaaattt 56397539  T
Q  308 atttagattccataaaagtcttgattcaatatctcaagattttcttttnnnnnnnnnnttctattaaaatcctttgaaatctcaattcaatacac 402  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||           ||||||||||||||||||||||||||||||||||||    
T  56397538 atttagattccataaaagtcttgaatcaatacctcaagattttcttttcataaaaaag-tctattaaaatcctttgaaatctcaattcaatacac 56397445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 80 - 347
Target Start/End: Complemental strand, 42315223 - 42314955
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42315223 ttggaagagtattacaaaatctcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 42315124  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtctt 278  Q
    || |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||        || ||    
T  42315123 ttgaaatccgtctaattttcaataccacgagacattttataagtttttagaaatcttaattgaataccaacggattttgatgtcttgaaaaaaaagtttt 42315024  T
Q  279 aattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagat 347  Q
     ||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  42315023 tattgtcttcattgaataccacaagatttatttagattccataaaaatcttgattcaatacctcaagat 42314955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 94 - 338
Target Start/End: Complemental strand, 38231082 - 38230837
Alignment:
Q  94 caaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtcta 193  Q
    |||||| ||||| |||| ||||||||||||||| |||    ||||||||||||||||||||| ||||||||  |   | |||||||| ||||||  |  |    
T  38231082 caaaatctcaagggtttctgtgagattgttggaagagatatttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctataga 38230983  T
Q  194 attttcaataccacgagacattttataagtc-ttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattg 292  Q
     |||| |||||||   |||| || ||||||| | |||||||| |||||||||||||||||||||| ||  ||         ||| | ||||| |||||||    
T  38230982 cttttgaataccaatggacaattcataagtcatgagaaatctcaattgaataccaacggattttgttgccttaaaaaaaaagtcatgattgtcttgattg 38230883  T
Q  293 aatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||| ||||||||| |||| |||  ||||||||||||||| ||||    
T  38230882 aataccacaagatttgtttaaattttataaaagtcttgattgaata 38230837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 338
Target Start/End: Original strand, 28100397 - 28100601
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatc 233  Q
    |||||||||||||||||| || ||||||||  | ||| |||||||| ||||||  |  | |||| ||||| |  |||||||||||||| | | |||||||    
T  28100397 ttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatctattaatttttgaatactaaaagacattttataagttgtgagaaatc 28100496  T
Q  234 ttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgatt 333  Q
    ||||||||||| |||||||||| | |   |||        ||||| ||||| |||||||||||| | |||||||||||| |||  |||||||||||||||    
T  28100497 ttaattgaatatcaacggatttcgttacattgtaaaaaaagtcttgattgtcttgattgaataccataagatttatttatattttataaaagtcttgatt 28100596  T
Q  334 caata 338  Q
     ||||    
T  28100597 gaata 28100601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 346
Target Start/End: Complemental strand, 53272178 - 53271966
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagtcttagaaa-tc 233  Q
    ||||| ||||||||||||||| |||||| |  | ||| ||||||||||||||  || || |||| |||||||  ||||||||||||||||    ||| ||    
T  53272178 ttttagctaaaaagtctcacaaaatccactccataaaagaatccattaaaatatgtatacttttgaataccaatagacattttataagtcagccaaagtc 53272079  T
Q  234 ttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgatt 333  Q
    | | |||||||||| ||||||| | ||   ||        ||||| ||||| |||||||||||| |||| ||||||||| |||  |||||||||||||||    
T  53272078 tcatttgaataccaccggatttcgttgccctgaataaaaagtcttgattgtcttgattgaataccacaatatttatttatattatataaaagtcttgatt 53271979  T
Q  334 caatatctcaaga 346  Q
     |||||| |||||    
T  53271978 gaatatcacaaga 53271966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 338
Target Start/End: Original strand, 37370702 - 37370906
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatc 233  Q
    ||||||||| ||||||||||| ||||||||  | ||| |||||||||||||||  || | |||| ||||||    ||||||||||||| | | |||||||    
T  37370702 ttttaactataaagtctcacaaaatccattccataaaagaatccattaaaatctatcaatttttgaataccgaaggacattttataagttgtgagaaatc 37370801  T
Q  234 ttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgatt 333  Q
    ||||||||||| ||||  |||| | ||| ||         ||| | ||||| || ||||||||| |||||||||||||| |||  |||||||| ||||||    
T  37370802 ttaattgaatagcaacaaatttcgttgtattttaaaaaaagtcatgattgtcttaattgaataccacaagatttatttatattttataaaagttttgatt 37370901  T
Q  334 caata 338  Q
     ||||    
T  37370902 gaata 37370906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 44930309 - 44930254
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||| | ||||||||||||   ||||||||||||||    
T  44930309 aaaatatataacctgccattgttatagtagaacagaaaagaatttggaagaaacgt 44930254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 255
Target Start/End: Complemental strand, 53594347 - 53594234
Alignment:
Q  143 aaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagtctt-agaaatcttaattga 241  Q
    ||||||||||||| ||||||||  | |||  ||||||| ||||||  || | |||| ||||||   |||||||||||||||  | ||||||| |||||||    
T  53594347 aaaaagtctcacaaaatccattccataaaaaaatccatcaaaatctatcaattttttaataccgaaagacattttataagttgtgagaaatcctaattga 53594248  T
Q  242 ataccaacggattt 255  Q
    ||||||||||||||    
T  53594247 ataccaacggattt 53594234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 1848482 - 1848546
Alignment:
Q  274 gtcttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||| ||| |||| ||||||||| |||||||||||||| |||  ||||||||||||||| ||||    
T  1848482 gtcttgatttttttaattgaataccacaagatttatttatattttataaaagtcttgattaaata 1848546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 3435628 - 3435680
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaa 65  Q
    |||||||||||||||||||||||||| |||||||||| |   |||||||||||    
T  3435628 aaaatatataacctgccattgttacagtagaacagaagagaatttggaagaaa 3435680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 5117231 - 5117179
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatc 187  Q
    ||||||||||||||||||||| |||||||| ||| || ||||||||| |||||    
T  5117231 ttttaactaaaaagtctcacaaaatccattctactaaggaatccattgaaatc 5117179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 42218099 - 42218154
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    ||||||||||| |||||||||||||| ||||| ||||||   ||||||||||||||    
T  42218099 aaaatatataatctgccattgttacagtagaatagaaaagaatttggaagaaacgt 42218154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 20539061 - 20539023
Alignment:
Q  274 gtcttaattgttttgattgaatactacaagatttattta 312  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  20539061 gtcttaattgtcttgattgaataccacaagatttattta 20539023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 8584056 - 8584092
Alignment:
Q  371 ttaaaatcctttgaaatctcaattcaatacactcctt 407  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  8584056 ttaaaatcctttgaaatctcaatccaatacacccctt 8584092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 26336110 - 26336078
Alignment:
Q  371 ttaaaatcctttgaaatctcaattcaatacact 403  Q
    |||||||||||||||||||||||| ||||||||    
T  26336110 ttaaaatcctttgaaatctcaattgaatacact 26336078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 41762247 - 41762131
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagtctt-agaaatc 233  Q
    ||||||||||||| | ||||| |||||| |  | ||| |||| ||| || |||| |  |||||| |||||||  |||||||||||||||  | |||||||    
T  41762247 ttttaactaaaaaatttcacaaaatccactccataaaagaattcatcaatatccataaaattttaaataccaaaagacattttataagttgtgagaaatc 41762148  T
Q  234 ttaattgaataccaacg 250  Q
     ||||||||||||||||    
T  41762147 ctaattgaataccaacg 41762131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 44646838 - 44646774
Alignment:
Q  286 ttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagatttt 350  Q
    |||||||||||| | ||||||||||||  ||  ||||||||||||||| |||| | |||||||||    
T  44646838 ttgattgaataccataagatttatttatgttttataaaagtcttgattgaataccacaagatttt 44646774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 54509747 - 54509711
Alignment:
Q  371 ttaaaatcctttgaaatctcaattcaatacactcctt 407  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  54509747 ttaaaatcctttgaaatctcaattgaatacacccctt 54509711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 80 - 402
Target Start/End: Original strand, 21736365 - 21736687
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  21736365 ttggaagagtattacaaaatctgaagagtttgtgtgagattgttagatgagtttattttaactaaaaagtctcacacaatccattacacaaatgaatcca 21736464  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttat-aagtcttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtctt 278  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||        ||||     
T  21736465 ttaaaatccgtctaattttcaataccacgagacattttataaattcttagaaatcttaattgaataccaacggattttgatgtcttgaaaaaaaagtcta 21736564  T
Q  279 aattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagattttcttttnnnnnnnnnnttctattaaaatc 378  Q
    |||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||           ||||||||||||    
T  21736565 aattgtcttgattgaatacaacaagatttatttagatttcataaaagtattgattcaatacctcaagattttcttttcataaaaaag-tctattaaaatc 21736663  T
Q  379 ctttgaaatctcaattcaatacac 402  Q
    ||||||||||||||||||||||||    
T  21736664 ctttgaaatctcaattcaatacac 21736687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 80 - 355
Target Start/End: Original strand, 35172398 - 35172675
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35172398 ttggaagagtattacaaaatctcaagagtttgtgtgagattgttggaagagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 35172497  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttg-nnnnnnnngtct 277  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||         ||||    
T  35172498 ttaaaatccgtctaattttcaataccacgaaacattttataagttcttataaatcttaattgaataccaacggattttgatgtcttgaaaaaaaaagtct 35172597  T
Q  278 taattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagattttctttt 355  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35172598 taattgtcttgattgaataccacaagatttatttagattccataaaagtcttgattcaatacctcaagattttctttt 35172675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 80 - 407
Target Start/End: Original strand, 7487890 - 7488216
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||||||||||||| |||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  7487890 ttggaagagtattacaaaatctcaagattttgtgtgaaattgttggatgagtttattttaactaaaaagtctcacacaatccattacacaaatgaatcca 7487989  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtctt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||         |||||    
T  7487990 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaataccaacgaattttgatgtctt-aaaaaaaagtctt 7488088  T
Q  279 aattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagattttcttttnnnnnnnnnnttctattaaaatc 378  Q
    |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||           |||||||||||     
T  7488089 aattgtcttgattgaataccacaagatttatttagatttcataaaagtcttgattcaataccacaagattttcttttcataaaaaag-tctattaaaatt 7488187  T
Q  379 ctttgaaatctcaattcaatacactcctt 407  Q
     ||||||||||||||||||||||| ||||    
T  7488188 atttgaaatctcaattcaatacacccctt 7488216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 85 - 338
Target Start/End: Original strand, 36598233 - 36598486
Alignment:
Q  85 agagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaa 184  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||  ||| |||||| |||||||    
T  36598233 agagtatcacaaaatttcaagagtttgtgtgagattgttggatgagtttattttaaataaaaagtctcacacaatctatttcacagatgaattcattaaa 36598332  T
Q  185 atccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattg 283  Q
    |||  ||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||| | ||| ||         ||||| |||     
T  36598333 atctctctaattttcaataccaagagacattttataagttcctagaaatcttaattgaataccaacggatttcgttgtatt-taaaaaaagtcttgatta 36598431  T
Q  284 ttttgattgaatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    | |||||||||||| |||| ||||||||| |||  ||||||||||||||| ||||    
T  36598432 tcttgattgaataccacaatatttatttaaattttataaaagtcttgattaaata 36598486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 85 - 255
Target Start/End: Original strand, 14920391 - 14920559
Alignment:
Q  85 agagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaa 184  Q
    ||||||| ||||||| ||||||||||||||||| |||| | || ||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  14920391 agagtatcacaaaatctcaagagtttgtgtgag-ttgtag-at-agtctattttaactaaaaagtctcacacaatctattccacaaatgaatccattaaa 14920487  T
Q  185 atccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattt 255  Q
    |||  ||||||||||||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||    
T  14920488 atctctctaattttcaataccaagagacattttataagttcctagaaatctcaattgaataccaacggattt 14920559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 119 - 255
Target Start/End: Complemental strand, 16147108 - 16146971
Alignment:
Q  119 ttgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacatttta 218  Q
    |||||||||||||||||||||| |||||||||||||||||||||||  | ||||||||| |||||||||||| ||||||||||| |||  ||||||||||    
T  16147108 ttgttggatgagtgtattttaattaaaaagtctcacacaatccattccataaatgaatctattaaaatccgtttaattttcaatcccaacagacatttta 16147009  T
Q  219 taag-tcttagaaatcttaattgaataccaacggattt 255  Q
     ||| |||||||||||| ||||||||  ||||||||||    
T  16147008 aaagttcttagaaatctcaattgaatgtcaacggattt 16146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 338
Target Start/End: Complemental strand, 16155694 - 16155475
Alignment:
Q  119 ttgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacatttta 218  Q
    |||||||||| ||||||||||| ||||||||||||||||||| |||  | |||||||| ||||||||||| | |||| |||||||||| || ||||||||    
T  16155694 ttgttggatgcgtgtattttaattaaaaagtctcacacaatcaattccataaatgaattcattaaaatccatttaatattcaataccaagaaacatttta 16155595  T
Q  219 taa-gtcttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattgaatactacaagatttatttagattc 317  Q
     ||  |||||||||||| |||||||| ||||||||||| | || ||||        ||||||||||| || ||||||||| |||| |||||| || |||     
T  16155594 aaatttcttagaaatctcaattgaatgccaacggatttcgttgctttg-aaaaaaagtcttaattgtcttaattgaataccacaaaatttatataaattt 16155496  T
Q  318 cataaaagtcttgattcaata 338  Q
     |||||||| |||||| ||||    
T  16155495 tataaaagttttgattgaata 16155475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 257
Target Start/End: Original strand, 15284341 - 15284466
Alignment:
Q  135 ttttaactaaaaagt-ctcacacaatccattatacaaatgaatccattaaaatccgtctaatttt-caataccacgagacattttataagtc-ttagaaa 231  Q
    ||||||||||||||| |||||| |||||||| |||||| |||||||||||||||  |  | ||||  |||||||  ||||| || ||||||| | |||||    
T  15284341 ttttaactaaaaagtactcacaaaatccattgtacaaaagaatccattaaaatctataaacttttgtaataccaatagacaattcataagtcatgagaaa 15284440  T
Q  232 tcttaattgaataccaacggattttg 257  Q
    ||||||||||||||||||||||||||    
T  15284441 tcttaattgaataccaacggattttg 15284466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 18176284 - 18176397
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagtctta-gaaatc 233  Q
    ||||||||||||||||||||| |||||| | |||||  |||||||||||||||     |||||| |||||||  ||||||||||||||  |||  |||||    
T  18176284 ttttaactaaaaagtctcacaaaatccactctacaatagaatccattaaaatctcaagaattttgaataccaatagacattttataagatttataaaatc 18176383  T
Q  234 ttaattgaatacca 247  Q
    | ||||||||||||    
T  18176384 tcaattgaatacca 18176397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 6289162 - 6289217
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||||| ||||||||||||   ||||||| ||||||    
T  6289162 aaaatatataacctgccattgttacagtagaacagaaaagaatttggaataaacgt 6289217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 29941380 - 29941325
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||| ||||||||||||| ||||||||||||   ||||||||||||||    
T  29941380 aaaatatataacatgccattgttacagtagaacagaaaagaatttggaagaaacgt 29941325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 2288634 - 2288604
Alignment:
Q  227 agaaatcttaattgaataccaacggattttg 257  Q
    |||||||||||||||||||||||||||||||    
T  2288634 agaaatcttaattgaataccaacggattttg 2288604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 43022619 - 43022570
Alignment:
Q  289 attgaatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||||||| ||||||||| |||| |||| ||||||||||||||| ||||    
T  43022619 attgaataccacaagatttctttacattctataaaagtcttgatttaata 43022570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 24935957 - 24936005
Alignment:
Q  139 aactaaaaagtctcacacaatccattatacaaatgaatccattaaaatc 187  Q
    ||||||||||||||||| |||| ||||||  || |||||||||||||||    
T  24935957 aactaaaaagtctcacaaaatctattatattaaggaatccattaaaatc 24936005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 43022705 - 43022654
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatc 187  Q
    ||||||||||||| ||||||| ||| |||||| |||| |||||||||||||||    
T  43022705 ttttaactaaaaa-tctcacaaaattcattattcaaaagaatccattaaaatc 43022654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 80 - 407
Target Start/End: Original strand, 3604214 - 3604540
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  3604214 ttggaagagtattacaaaatctcaagagtttgtgtgagattgttggatgagtgtattttaactaaaa-gtctcacacaatccattacgcaaatgaatcca 3604312  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtctt 278  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||        |||||    
T  3604313 ttaaaatctgtctaattttcaataccacgagacattttataagttcttaaaaatcttaattgaataccaacggattttgatgtcttgaataaaaagtctt 3604412  T
Q  279 aattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagattttcttttnnnnnnnnnnttctattaaaatc 378  Q
    |||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||           ||||||||||||    
T  3604413 aattgtcttgattgaataccacaagatttatttagatttcataaaagttttgattcaatacctcaagattttcttttcataagaaag-tctattaaaatc 3604511  T
Q  379 ctttgaaatctcaattcaatacactcctt 407  Q
     ||||||||||||||||||||||| ||||    
T  3604512 atttgaaatctcaattcaatacacccctt 3604540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 94 - 338
Target Start/End: Complemental strand, 378543 - 378298
Alignment:
Q  94 caaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtcta 193  Q
    |||||| |||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||  | | | |||||||||||||||  || |    
T  378543 caaaatctcaagagtttatgtgagattgttggatgagtatatttcaactaaaaagtttcacacaatccattccatagaagaatccattaaaatctatcaa 378444  T
Q  194 attttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattg 292  Q
    |||||||| | |  ||||||||||||||| |||||||||||| ||||||||||||||  |||| | ||| |||        ||||| |||||||||||||    
T  378443 attttcaacatcgagagacattttataagttcttagaaatctcaattgaataccaacatatttcgttgtcttgaaaaaaaagtcttgattgttttgattg 378344  T
Q  293 aatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||||||||||||||||||||||  ||| ||||||||||| ||||    
T  378343 aatactacaagatttatttagattttatagaagtcttgattgaata 378298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 135 - 255
Target Start/End: Original strand, 28594256 - 28594377
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatc 233  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||||||||||||  || | |||| ||||||   |||||||||||||| | | |||||||    
T  28594256 ttttaactaaaaagtctcacaaaatccattatataaaagaatccattaaaatctatcaatttttgaataccgaaagacattttataagttgtgagaaatc 28594355  T
Q  234 ttaattgaataccaacggattt 255  Q
     |||||||||||||||||||||    
T  28594356 ctaattgaataccaacggattt 28594377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 135 - 338
Target Start/End: Original strand, 2276020 - 2276224
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagtc-ttagaaatc 233  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||  |  | |||| |||| ||  ||||| || ||||||| | ||||||     
T  2276020 ttttaactaaaaaatctcacaaaatccattatacaaaagaatccattaaaatctatagacttttgaatatcaatagacaattcataagtcatgagaaatt 2276119  T
Q  234 ttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgatt 333  Q
    ||||||||||||||||| |||||| ||  ||          || | |||||||| ||||||||| |||||||||||||| |||  |||||||||||||||    
T  2276120 ttaattgaataccaacgaattttgttgccttaaaaaaaaaatcatgattgttttaattgaataccacaagatttatttacattttataaaagtcttgatt 2276219  T
Q  334 caata 338  Q
     ||||    
T  2276220 gaata 2276224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 338
Target Start/End: Original strand, 26806465 - 26806595
Alignment:
Q  209 agacattttataagtctt-agaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattgaatactacaagattt 307  Q
    |||||||||||||||  | ||||||| |||||||||||||| |||||| | ||  |||        ||||| ||||| || |||||||||||||||||||    
T  26806465 agacattttataagttgtgagaaatcctaattgaataccaatggatttcgttgcattgaaaaaaaagtcttgattgtcttaattgaatactacaagattt 26806564  T
Q  308 atttagattccataaaagtcttgattcaata 338  Q
    ||||| |||  ||||||||||||||| ||||    
T  26806565 atttatattttataaaagtcttgattgaata 26806595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 26806667 - 26806728
Alignment:
Q  289 attgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagatttt 350  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||| |||||| |||||||||    
T  26806667 attgaataccacaagatttatttatattttataaaagtcttgattgaatatcacaagatttt 26806728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 338
Target Start/End: Original strand, 26795401 - 26795531
Alignment:
Q  209 agacattttataagtctt-agaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattgaatactacaagattt 307  Q
    |||||||||||||||  | ||||||| |||||||||||||| |||||| | ||  |||        ||||| ||||| || |||||||||||||||||||    
T  26795401 agacattttataagttgtgagaaatcctaattgaataccaatggatttcgttgcattgaaaaaaaagtcttgattgtcttaattgaatactacaagattt 26795500  T
Q  308 atttagattccataaaagtcttgattcaata 338  Q
    ||||| |||  |||||||| |||||| ||||    
T  26795501 atttatattttataaaagttttgattgaata 26795531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 27786472 - 27786362
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatc 233  Q
    ||||||||||||||||||||| ||||||||  | ||| |||||||||||||||  || | |||| ||||||    ||||||||||||| | | |||||||    
T  27786472 ttttaactaaaaagtctcacaaaatccattccataaaagaatccattaaaatctatcaatttttgaataccgaatgacattttataagttgtgagaaatc 27786373  T
Q  234 ttaattgaata 244  Q
     ||||||||||    
T  27786372 ataattgaata 27786362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 26795603 - 26795664
Alignment:
Q  289 attgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagatttt 350  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||| |||| | |||||||||    
T  26795603 attgaataccacaagatttatttatattttataaaagtcttgattgaataccacaagatttt 26795664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 3604124 - 3604179
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    ||||||||||||||||||||| |||| ||||||| ||||   ||||||||||||||    
T  3604124 aaaatatataacctgccattgctacagtagaacaaaaaagaatttggaagaaacgt 3604179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 13950451 - 13950506
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    ||||||||||| |||||||||||||| ||||||||||||   |||| |||||||||    
T  13950451 aaaatatataatctgccattgttacagtagaacagaaaagaatttgaaagaaacgt 13950506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 40411024 - 40410969
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    ||||||||||||||| |||||||||| ||||| ||||||   ||||||||||||||    
T  40411024 aaaatatataacctgtcattgttacagtagaatagaaaagaatttggaagaaacgt 40410969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 26630239 - 26630308
Alignment:
Q  108 tttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatc 177  Q
    ||||| |||||||||||  |||||||||||||| | |||| |||| || |||||||||||| || |||||    
T  26630239 tttgtatgagattgttgagtgagtgtattttaattcaaaaatctctcaaaatccattatactaaagaatc 26630308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 80 - 402
Target Start/End: Original strand, 12253152 - 12253473
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12253152 ttggaagagtattataaa-tctcaagagtttgtgtgggattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 12253250  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtctt 278  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||        |||||    
T  12253251 ttaaaattcgtctaattttcaataccatgagacattttataagttcttagaaatcttaattgaataccaacagattttgatgtcttgaaaaaaaagtctt 12253350  T
Q  279 aattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagattttcttttnnnnnnnnnnttctattaaaatc 378  Q
    |||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| || |||||||||||||           ||||||||||||    
T  12253351 aattgtcttgattgaataccataagatttatttagattccataaaagtcttgattcaatacctaaagattttcttttcataaaaaag-tctattaaaatc 12253449  T
Q  379 ctttgaaatctcaattcaatacac 402  Q
    ||||||||||||||||||||||||    
T  12253450 ctttgaaatctcaattcaatacac 12253473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 80 - 402
Target Start/End: Complemental strand, 33474845 - 33474520
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  33474845 ttggaagagtattacaaaatctcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcaa 33474746  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttg----nnnnnnnng 274  Q
    |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| || ||| |||| |||                 
T  33474745 ttaaaatccgtctaattttcaataccacaagatattttataagttcttagaaatcttaattgaataccaac-gaatttaatgtcttgaagaaaaaaaaaa 33474647  T
Q  275 tcttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagattttcttttnnnnnnnnnnttctattaa 374  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||           ||||||||    
T  33474646 tcttaattgtcttgattgaataccacaagatttatttagattccataaaagtcttgattcaataactcaagattttatgttcataaaaaaa-tctattaa 33474548  T
Q  375 aatcctttgaaatctcaattcaatacac 402  Q
    ||||||||||||||||||||||||||||    
T  33474547 aatcctttgaaatctcaattcaatacac 33474520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 42678008 - 42678121
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatc 233  Q
    ||||||||||||||||||| | |||||||| |||||| ||||||||||||||| |   | |||| |||||||  |||||||||||||| |  || |||||    
T  42678008 ttttaactaaaaagtctcataaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagttggtacaaatc 42678107  T
Q  234 ttaattgaatacca 247  Q
    ||||||||||||||    
T  42678108 ttaattgaatacca 42678121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 340
Target Start/End: Original strand, 46037115 - 46037371
Alignment:
Q  95 aaaatttcaagagtttgtgtgagattgttggatgagtgta----------ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaa 184  Q
    ||||| ||||| |||||||||||||||||||||||| |||          ||||||||||||||||||||| ||||||||  |   | |||||||| |||    
T  46037115 aaaatctcaagggtttgtgtgagattgttggatgagagtattatttatatttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaa 46037214  T
Q  185 atccgtctaattttcaataccacgagacattttataagtc-ttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattg 283  Q
    |||  |  | |||| |||||||  ||||| || ||||||| | |||||||| |||||||||||||||||||||| ||  ||         ||| | ||||    
T  46037215 atctatagacttttgaataccaatagacaattcataagtcatgagaaatctcaattgaataccaacggattttgttgccttaaaaaaaaagtcatgattg 46037314  T
Q  284 ttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatc 340  Q
    | |||||||||||  ||||||||| |||| |||  ||||||||||||||| ||||||    
T  46037315 tcttgattgaatatcacaagatttgtttacattttataaaagtcttgattgaatatc 46037371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 3634473 - 3634353
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagtctt-agaaatc 233  Q
    |||||||||||||||||| || ||||||||  | ||| |||||||| ||||||  |  | |||| |||||||  | |||||||||||||  | |||||||    
T  3634473 ttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatcaattaatttttgaataccaaaatacattttataagttgtgagaaatc 3634374  T
Q  234 ttaattgaataccaacggatt 254  Q
    |||||||||||||||||||||    
T  3634373 ttaattgaataccaacggatt 3634353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 152286 - 152231
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  152286 aaaatatataacctgccattgttacagtagaacagaaaagaatttggaagaaacgt 152231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 37042357 - 37042499
Alignment:
Q  113 gtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagac 212  Q
    ||||||||||||||| | ||||||||||||||||| ||||||| ||||||||   | || |||| |||| |||||  | || |||| ||||||| ||||     
T  37042357 gtgagattgttggataaatgtattttaactaaaaa-tctcacaaaatccatttcgccaaagaattcatttaaatctatgtatttttgaataccatgagat 37042455  T
Q  213 attttataag-tcttagaaatcttaattgaataccaacggattt 255  Q
    | |||||||| | | ||||||||||||||||||| | |||||||    
T  37042456 aatttataagttgtgagaaatcttaattgaatactaccggattt 37042499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 43057330 - 43057385
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  43057330 aaaatatataacctgccattgttacagtagaacagaaaagaatttggaagaaacgt 43057385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 30890163 - 30890211
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatg 128  Q
    ||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  30890163 ttggaagagaatgccaaaatttcaagagtttgtgtgagattgttggatg 30890211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 32630967 - 32630915
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatc 187  Q
    ||||||||||||||||||||| |||||||||||  || |||||||||||||||    
T  32630967 ttttaactaaaaagtctcacaaaatccattatatcaaggaatccattaaaatc 32630915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 33474917 - 33474862
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||| ||||||||||||| ||||||||||||   ||||||||||||||    
T  33474917 aaaatatataacatgccattgttacagtagaacagaaaagaatttggaagaaacgt 33474862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 47913985 - 47914040
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||| ||||||||||| ||||||||||||   ||||||||||||||    
T  47913985 aaaatatataacctaccattgttacagtagaacagaaaagaatttggaagaaacgt 47914040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 34115282 - 34115340
Alignment:
Q  130 gtgtatttt-aactaaaaagtctcacacaatccattatacaaatgaatccattaaaatc 187  Q
    ||||||||| || |||||||||||||| |||||| |||||||| |||||||||||||||    
T  34115282 gtgtattttcaattaaaaagtctcacaaaatccactatacaaaagaatccattaaaatc 34115340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 48399960 - 48399906
Alignment:
Q  133 tattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatc 187  Q
    ||||||||||| ||||||||||| |||||||| || ||| |||||||||||||||    
T  48399960 tattttaactagaaagtctcacaaaatccattctagaaaagaatccattaaaatc 48399906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 30111234 - 30111181
Alignment:
Q  15 aatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    ||||||||| |||||||||||||| ||||||||||||   ||||||||||||||    
T  30111234 aatatataatctgccattgttacagtagaacagaaaagaatttggaagaaacgt 30111181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 36355303 - 36355351
Alignment:
Q  139 aactaaaaagtctcacacaatccattatacaaatgaatccattaaaatc 187  Q
    ||||||||||||||||| |||||||||||  || |||||||||||||||    
T  36355303 aactaaaaagtctcacaaaatccattatatcaaggaatccattaaaatc 36355351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 47912668 - 47912630
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaa 51  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  47912668 aaaatatataacctaccattgttacagtagaacagaaaa 47912630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 34115443 - 34115492
Alignment:
Q  289 attgaatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||||||| |  ||||||||||| |||||||||||||||||||| ||||    
T  34115443 attgaataccatgagatttatttatattccataaaagtcttgattgaata 34115492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 12253067 - 12253127
Alignment:
Q  8 cgaagaaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||| |||||||||||| ||||||||||| | ||||||||||||   |||| |||||||||    
T  12253067 cgaacaaaatatataacttgccattgttatagtagaacagaaaagaatttgaaagaaacgt 12253127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 42678149 - 42678225
Alignment:
Q  274 gtcttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagatttt 350  Q
    ||||| ||||| |||||||||||| |  |||||||||||  || |||||||||||| ||| |||||| | |||||||    
T  42678149 gtcttgattgtcttgattgaataccatgagatttatttatgtttcataaaagtcttaattgaatatcaccagatttt 42678225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 80 - 402
Target Start/End: Complemental strand, 23697331 - 23697007
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||| ||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23697331 ttggaagagtgttacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 23697232  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttg--nnnnnnnngtc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||          |||    
T  23697231 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaacggattttgatgtcttgaaaaaaaaaagtc 23697132  T
Q  277 ttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagattttcttttnnnnnnnnnnttctattaaaa 376  Q
    |||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||           ||||||||||    
T  23697131 ttaattgtcttgattgaataccacatgatttatttagattcaataaaagtcttgattcaataactcaagattttcttttcataaaaaag-tctattaaaa 23697033  T
Q  377 tcctttgaaatctcaattcaatacac 402  Q
    | ||||||||| ||||||||||||||    
T  23697032 ttctttgaaatttcaattcaatacac 23697007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 80 - 402
Target Start/End: Complemental strand, 23715787 - 23715462
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||| ||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23715787 ttggaagagtgttacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 23715688  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttg---nnnnnnnngt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||           ||    
T  23715687 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatgcaaacggattttgatgtcttgaaaaaaaaaaagt 23715588  T
Q  276 cttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagattttcttttnnnnnnnnnnttctattaaa 375  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||           |||||||||    
T  23715587 cttaattgtcttgattgaataccacatgatttatttagattcaataaaagtcttgattcaataactcaagattttcttttcataaaaaag-tctattaaa 23715489  T
Q  376 atcctttgaaatctcaattcaatacac 402  Q
    || ||||||||| ||||||||||||||    
T  23715488 attctttgaaatttcaattcaatacac 23715462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 80 - 402
Target Start/End: Complemental strand, 23734243 - 23733918
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||| ||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23734243 ttggaagagtgttacaaaatctaaagagtttgtttgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 23734144  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttg---nnnnnnnngt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||           ||    
T  23734143 ttaaaatccgtctaattttcaataccacgagacattttataagttcttagaaatcttaattgaatgcaaacggattttgatgtcttgaaaaaaaaaaagt 23734044  T
Q  276 cttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagattttcttttnnnnnnnnnnttctattaaa 375  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||           |||||||||    
T  23734043 cttaattgtcttgattgaataccacatgatttatttagattcaataaaagtcttgattcaataactcaagattttcttttcataaaaaag-tctattaaa 23733945  T
Q  376 atcctttgaaatctcaattcaatacac 402  Q
    || ||||||||| ||||||||||||||    
T  23733944 attctttgaaatttcaattcaatacac 23733918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 80 - 355
Target Start/End: Complemental strand, 86075 - 85798
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  86075 ttggaagagtattacaaaatcttaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattacacaaatgaatcca 85976  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgttttg-nnnnnnnngtct 277  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||          |||    
T  85975 gtaaaatccgtctaattttcaataccacgagacattttataagttcttaaaaatcttaattgaataccaacggattttgatgtcttgaaaaaaaaaatct 85876  T
Q  278 taattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagattttctttt 355  Q
    ||||||| |||||||||||  |||||||||||||||||||||||||| ||||||||| |||  | ||||| |||||||    
T  85875 taattgtcttgattgaatatcacaagatttatttagattccataaaaatcttgattcgatacataaagatattctttt 85798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 80 - 261
Target Start/End: Complemental strand, 23753906 - 23753724
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  23753906 ttggaagagtattacaaaatctaaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaattcattacacaaatgaatcca 23753807  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattttgatgt 261  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||    
T  23753806 ttaaaatccgtctaactttcaataccacgagacattttataagttcttagaaatcttaattgaatacaaacagattttgatgt 23753724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 276 - 402
Target Start/End: Complemental strand, 23752501 - 23752376
Alignment:
Q  276 cttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagattttcttttnnnnnnnnnnttctattaaa 375  Q
    ||||||||| |||||||||||| ||| |||||||||| |||| |||||||||||||||||||| ||||||||||||||||           |||||||||    
T  23752501 cttaattgtcttgattgaataccacatgatttatttaaattcaataaaagtcttgattcaataactcaagattttcttttcataaaaaag-tctattaaa 23752403  T
Q  376 atcctttgaaatctcaattcaatacac 402  Q
    ||  |||||||||||||||||||||||    
T  23752402 ataatttgaaatctcaattcaatacac 23752376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 338
Target Start/End: Original strand, 44041854 - 44042064
Alignment:
Q  130 gtgtatttt-aactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagtct-ta 227  Q
    ||||||||| |||||||||||||||   ||||||||  ||||| ||||| |||||||||    || |||||||||||| ||||||||||||||||||       
T  44041854 gtgtattttcaactaaaaagtctcatgaaatccattccacaaaagaatctattaaaatctacatacttttcaataccaagagacattttataagtctggg 44041953  T
Q  228 gaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattgaatactacaagatttatttagattccataaaagtc 327  Q
    ||||||| | ||| |||||| | ||||| | ||  |||         |||| ||||| || ||||||||| |||||||||||||| |||| |||||||||    
T  44041954 gaaatctcatttggataccaccagatttcgttgccttgaacaaacaatcttgattgtcttaattgaataccacaagatttatttatattctataaaagtc 44042053  T
Q  328 ttgattcaata 338  Q
    |||||| ||||    
T  44042054 ttgattgaata 44042064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 23697406 - 23697351
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||||||||||||| ||||   ||||||||||||||    
T  23697406 aaaatatataacctgccattgttacaatagaacataaaagaatttggaagaaacgt 23697351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 23715862 - 23715807
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||||||||||||| ||||   ||||||||||||||    
T  23715862 aaaatatataacctgccattgttacaatagaacataaaagaatttggaagaaacgt 23715807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 23734318 - 23734263
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||||||||||||| ||||   ||||||||||||||    
T  23734318 aaaatatataacctgccattgttacaatagaacataaaagaatttggaagaaacgt 23734263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 23753982 - 23753927
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||||||||||| ||||||   ||||||||||||||    
T  23753982 aaaatatataacctgccattgttacaatagaatagaaaagaatttggaagaaacgt 23753927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 340
Target Start/End: Complemental strand, 44701811 - 44701607
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagtc-ttagaaatc 233  Q
    ||||||||||||||||||| | ||||||||  |   |||||||||| ||||||  |  | |||| |||||||  ||||| || |||| || |||||||||    
T  44701811 ttttaactaaaaagtctcataaaatccattccatccatgaatccatcaaaatctatagacttttgaataccaatagacaattcataaatcattagaaatc 44701712  T
Q  234 ttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgatt 333  Q
    | |||||||||||||| ||||||| ||  ||         ||| | |||||||||||||||||| ||||||||| |||| |||  |||||||||||||||    
T  44701711 tcaattgaataccaacagattttgttgcctt--aaaaaaagtcatgattgttttgattgaataccacaagatttgtttacattttataaaagtcttgatt 44701614  T
Q  334 caatatc 340  Q
     ||||||    
T  44701613 gaatatc 44701607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 10225624 - 10225688
Alignment:
Q  274 gtcttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||| ||||| || |||||||||||||||||||||||| |||  ||||||||||||||| ||||    
T  10225624 gtcttgattgtcttaattgaatactacaagatttatttatattttataaaagtcttgattgaata 10225688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 24150488 - 24150543
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||| ||||| ||||||||||||   ||||||||||||||    
T  24150488 aaaatatataacctgccatttttacagtagaacagaaaagaatttggaagaaacgt 24150543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 30589270 - 30589215
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    ||||||||||||||| |||||||||| ||||||||||||   ||||||||||||||    
T  30589270 aaaatatataacctgtcattgttacagtagaacagaaaagaatttggaagaaacgt 30589215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 338
Target Start/End: Original strand, 10104782 - 10104912
Alignment:
Q  209 agacattttataagtctt-agaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattgaatactacaagattt 307  Q
    |||||||||||||||  | ||||||| |||||||||||||| |||||| | ||  |||        ||||| ||||| || |||||||||||||||||||    
T  10104782 agacattttataagttgtgagaaatcctaattgaataccaatggatttcgttgcattgaaaaaaaagtcttgattgtcttaattgaatactacaagattt 10104881  T
Q  308 atttagattccataaaagtcttgattcaata 338  Q
    ||||| |||  |||||||| |||||| ||||    
T  10104882 atttatattttataaaagttttgattgaata 10104912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 12103363 - 12103421
Alignment:
Q  280 attgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||| ||| |||| ||||    
T  12103363 attgtcttgattgaatactacaagatttatttatattcaataaaaatctagattgaata 12103421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 10104984 - 10105045
Alignment:
Q  289 attgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagatttt 350  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||| |||| | |||||||||    
T  10104984 attgaataccacaagatttatttatattttataaaagtcttgattgaataccacaagatttt 10105045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 36054660 - 36054713
Alignment:
Q  15 aatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    ||||||||| |||||||||||||| ||||||||||||   ||||||||||||||    
T  36054660 aatatataatctgccattgttacagtagaacagaaaagaatttggaagaaacgt 36054713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 26293224 - 26293276
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaa 65  Q
    |||||||||||||||||||||||||| ||||| ||||||   |||||||||||    
T  26293224 aaaatatataacctgccattgttacagtagaatagaaaagaatttggaagaaa 26293276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 45215216 - 45215268
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatc 187  Q
    ||||||||||||||||||||| |||||| | ||||| |||||| |||||||||    
T  45215216 ttttaactaaaaagtctcacaaaatccactctacaattgaatctattaaaatc 45215268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 19551818 - 19551872
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    ||||||||||||||||||||| |||| ||||||||||||   ||||||||||||||    
T  19551818 aaaatatataacctgccattg-tacagtagaacagaaaagaatttggaagaaacgt 19551872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 26005514 - 26005569
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||| || |||||||||| ||||||||||||   ||||||||||||||    
T  26005514 aaaatatataacatgtcattgttacagtagaacagaaaagaatttggaagaaacgt 26005569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Complemental strand, 27593185 - 27593151
Alignment:
Q  371 ttaaaatcctttgaaatctcaattcaatacactcc 405  Q
    |||||||||||||||||||||||| ||||||||||    
T  27593185 ttaaaatcctttgaaatctcaattgaatacactcc 27593151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 38629456 - 38629494
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaa 51  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  38629456 aaaatatataatctgccattgttacagtagaacagaaaa 38629494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 10216131 - 10216180
Alignment:
Q  289 attgaatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||| ||||    
T  10216131 attgaatacgacaagatttatttatattttataaaagtcttgattgaata 10216180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 10225760 - 10225809
Alignment:
Q  289 attgaatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||| ||||    
T  10225760 attgaataccacaagatttatttatattttataaaagtcttgattgaata 10225809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 10055755 - 10055803
Alignment:
Q  290 ttgaatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    |||||||| |||||||||||||| |||  ||||||||||||||| ||||    
T  10055755 ttgaataccacaagatttatttatattttataaaagtcttgattgaata 10055803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 26293618 - 26293650
Alignment:
Q  371 ttaaaatcctttgaaatctcaattcaatacact 403  Q
    ||||||||||||||||| |||||||||||||||    
T  26293618 ttaaaatcctttgaaatttcaattcaatacact 26293650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 46749379 - 46749319
Alignment:
Q  275 tcttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgattca 335  Q
    |||| ||||| || ||||||||| | |||||||||||| |||  |||||||||||||||||    
T  46749379 tcttgattgtcttaattgaataccataagatttatttatattttataaaagtcttgattca 46749319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 80 - 255
Target Start/End: Complemental strand, 39758295 - 39758120
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||    
T  39758295 ttggaagagtatcacacaatctcaagagtttgtgtgagattgttggatgagtgtatttcaactaaaaagtctcacacaatccattccccaaatgaatcca 39758196  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattt 255  Q
    |||||||| | |  |||||||||||||  |||||||||||||| ||||||||||||||||||||||||||| |||||    
T  39758195 ttaaaatctg-catattttcaataccaaaagacattttataagttcttagaaatcttaattgaataccaacagattt 39758120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 80 - 255
Target Start/End: Complemental strand, 39763649 - 39763474
Alignment:
Q  80 ttggaagagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatcca 179  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||    
T  39763649 ttggaagagtatcacacaatctcaagagtttgtgtgagattgttggatgagtgtatttcaactaaaaagtctcacacaatccattccccaaatgaatcca 39763550  T
Q  180 ttaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggattt 255  Q
    |||||||| | |  |||||||||||||  |||||||||||||| ||||||||||||||||||||||||||| |||||    
T  39763549 ttaaaatctg-catattttcaataccaaaagacattttataagttcttagaaatcttaattgaataccaacagattt 39763474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 338
Target Start/End: Complemental strand, 48194900 - 48194655
Alignment:
Q  94 caaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtcta 193  Q
    |||||| ||||| |||| ||||||||||||||| |||    ||||||||||||||||||||| ||||||||  |   | |||||||| ||||||  |  |    
T  48194900 caaaatctcaagggtttctgtgagattgttggaagagatatttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctataga 48194801  T
Q  194 attttcaataccacgagacattttataagtctt-agaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattg 292  Q
     |||| |||||||   |||| || ||||||| | |||||||| |||||||||||||||||||||| ||  ||         ||| | ||||| |||||||    
T  48194800 cttttgaataccaatggacaattcataagtcatgagaaatctcaattgaataccaacggattttgttgccttaaaaaaaaagtcatgattgtcttgattg 48194701  T
Q  293 aatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||| ||||||||| ||||||||  ||||||||||||||| ||||    
T  48194700 aataccacaagatttgtttagattttataaaagtcttgattgaata 48194655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 257
Target Start/End: Original strand, 19007343 - 19007518
Alignment:
Q  93 acaaaatttcaagagtttgtgtgagattgttggatgagtgta----------ttttaactaaaaagtctcacacaatccattatacaaatgaatccatta 182  Q
    ||||||| ||||| |||||||||||||||||||||||| |||          ||||||||||||||||||||| ||||||||  |   | |||||||| |    
T  19007343 acaaaatctcaagggtttgtgtgagattgttggatgagagtattatttatatttttaactaaaaagtctcacaaaatccattccatccaagaatccatca 19007442  T
Q  183 aaatccgtctaattttcaataccacgagacattttataagtc-ttagaaatcttaattgaataccaacggattttg 257  Q
    |||||  |  | |||| |||||||  ||||| || ||||||| | |||||||| ||||||||||||||||||||||    
T  19007443 aaatctatagactttttaataccaatagacaattcataagtcatgagaaatctcaattgaataccaacggattttg 19007518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 256
Target Start/End: Complemental strand, 43553853 - 43553682
Alignment:
Q  85 agagtattacaaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaa 184  Q
    |||||||  |||||| |||||  |||||| ||||||||||||||| ||||||||||||||||| | ||| | ||||||||  || || ||||  ||||||    
T  43553853 agagtatgtcaaaatctcaaggttttgtgagagattgttggatgaatgtattttaactaaaaa-tttcaaaaaatccatttcaccaaagaatttattaaa 43553755  T
Q  185 atccgtctaattttcaataccacgagacattttataag-tcttagaaatcttaattgaataccaacggatttt 256  Q
    ||   | || |||| ||||||| |||||| |||||||| | | |||||||| |||||||| | ||||||||||    
T  43553754 atttatgtattttttaataccaagagacaatttataagttgtgagaaatctcaattgaatgctaacggatttt 43553682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 338
Target Start/End: Complemental strand, 48203658 - 48203413
Alignment:
Q  94 caaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtcta 193  Q
    |||||| ||||  |||| ||||||||||||||| |||    ||||||||||||||||||||| ||||||||  |   | |||||||| ||||||  |  |    
T  48203658 caaaatctcaaaggtttctgtgagattgttggaagagatatttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctataga 48203559  T
Q  194 attttcaataccacgagacattttataagtctt-agaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattg 292  Q
     |||| ||||||    |||| || ||||||| | |||||||| |||||||||||||||||||||| ||  ||         ||| | ||||| |||||||    
T  48203558 cttttgaatacctatggacaattcataagtcatgagaaatctcaattgaataccaacggattttgttgccttaaaaaaaaagtcatgattgtcttgattg 48203459  T
Q  293 aatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||| ||||||||| |||| |||  ||||||||||||||| ||||    
T  48203458 aataccacaagatttgtttatattttataaaagtcttgattgaata 48203413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 338
Target Start/End: Complemental strand, 4289062 - 4288998
Alignment:
Q  274 gtcttaattgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||| ||||| |||||||||||| ||| |||||||||| |||| ||||||||||||||| ||||    
T  4289062 gtcttgattgtcttgattgaataccacatgatttatttatattctataaaagtcttgattgaata 4288998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 45318896 - 45318841
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||||||||||||||||||| || |||||||||   ||||||||||||||    
T  45318896 aaaatatataacctgccattgttacagtataacagaaaagaatttggaagaaacgt 45318841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 27198540 - 27198419
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagt-cttagaaatc 233  Q
    |||||||||| |||||||||| |||| | | || ||| |||||||||||||||  | || |||| |||||||   ||||||||| ||||  | |||||||    
T  27198540 ttttaactaagaagtctcacaaaatcaactctataaaagaatccattaaaatctatatatttttgaataccaatggacattttagaagtaatgagaaatc 27198441  T
Q  234 ttaattgaataccaacggattt 255  Q
    | |||| |||||||||||||||    
T  27198440 tcaattcaataccaacggattt 27198419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 39758094 - 39758033
Alignment:
Q  289 attgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagatttt 350  Q
    ||||||||| ||||||||||| ||||||  ||||||||||||||||||||   |||||||||    
T  39758094 attgaataccacaagatttatatagatttaataaaagtcttgattcaatacgacaagatttt 39758033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 39763448 - 39763387
Alignment:
Q  289 attgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagatttt 350  Q
    ||||||||| ||||||||||| ||||||  ||||||||||||||||||||   |||||||||    
T  39763448 attgaataccacaagatttatatagatttaataaaagtcttgattcaatacgacaagatttt 39763387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 26882478 - 26882530
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaa 65  Q
    |||||||||||||||||||||||| | ||||||||||||   |||||||||||    
T  26882478 aaaatatataacctgccattgttatagtagaacagaaaagaatttggaagaaa 26882530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 51826651 - 51826703
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatc 187  Q
    ||||||||||||||||||||| |||||| | |||||  |||||||||||||||    
T  51826651 ttttaactaaaaagtctcacaaaatccactctacaatagaatccattaaaatc 51826703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 45535186 - 45535131
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||| | |||||||||||||||| |||||||||   ||||||||||||||    
T  45535186 aaaatatatatcttgccattgttacaataaaacagaaaagaatttggaagaaacgt 45535131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 52705820 - 52705765
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    ||||||||||| |||||||||||||| || |||||||||   ||||||||||||||    
T  52705820 aaaatatataatctgccattgttacagtataacagaaaagaatttggaagaaacgt 52705765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 28039368 - 28039434
Alignment:
Q  280 attgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaaga 346  Q
    ||||||||||||||| || | |||||||||||| |||  |||||||| || ||| ||||||||||||    
T  28039368 attgttttgattgaacaccataagatttatttatattttataaaagttttaattgaatatctcaaga 28039434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 4289202 - 4289113
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagtc 224  Q
    ||||| ||||||| ||||||| |||||| |  | ||| ||||||||||||||| || || |||| |||||||  | ||||||||||||||    
T  4289202 ttttagctaaaaattctcacaaaatccactccataaaagaatccattaaaatctgtatacttttgaataccagcaaacattttataagtc 4289113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 19007541 - 19007598
Alignment:
Q  281 ttgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    |||| |||||||||||| ||||||||| |||| |||  ||||||||||||||| ||||    
T  19007541 ttgtcttgattgaataccacaagatttgtttacattttataaaagtcttgattgaata 19007598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 1700 - 1813
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataag-tcttagaaatc 233  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |   | |||| |||||||  |||||||||||||| |  || |||||    
T  1700 ttttaactaaaaagtctcacaaaatccattctacaaaagaatccattaaaatctgcagatttttgaataccaatagacattttataagttggtacaaatc 1799  T
Q  234 ttaattgaatacca 247  Q
    ||||||||||||||    
T  1800 ttaattgaatacca 1813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 338
Target Start/End: Complemental strand, 7100474 - 7100229
Alignment:
Q  94 caaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtcta 193  Q
    |||||| ||||| |||| ||||||||||||||| |||    ||||||||||||||||||||| ||||||||  |   | |||||||| ||||||  |  |    
T  7100474 caaaatctcaagggtttctgtgagattgttggaagagatatttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctataga 7100375  T
Q  194 attttcaataccacgagacattttataagtctt-agaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattg 292  Q
     |||| |||||||   |||| || ||||||| | |||||||| |||||||||||||||||||||| ||  ||         ||| | ||||| |||||||    
T  7100374 cttttgaataccaatggacaattcataagtcatgagaaatctcaattgaataccaacggattttgttgccttaaaaaaaaagtcatgattgtcttgattg 7100275  T
Q  293 aatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||| ||||||||| ||||||||  ||||||||||||||| ||||    
T  7100274 aataccacaagatttgtttagattttataaaagtcttgattgaata 7100229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 338
Target Start/End: Original strand, 8794156 - 8794401
Alignment:
Q  94 caaaatttcaagagtttgtgtgagattgttggatgagtgtattttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtcta 193  Q
    |||||| ||||| |||| ||||||||||||||| |||    ||||||||||||||||||||| ||||||||  |   | |||||||| ||||||  |  |    
T  8794156 caaaatctcaagggtttctgtgagattgttggaagagatatttttaactaaaaagtctcacaaaatccattccatccaagaatccatcaaaatctataga 8794255  T
Q  194 attttcaataccacgagacattttataagtc-ttagaaatcttaattgaataccaacggattttgatgttttgnnnnnnnngtcttaattgttttgattg 292  Q
     |||| |||||||   |||| || ||||||| | |||||||| |||||||||||||||||||||| ||  ||         ||| | ||||| |||||||    
T  8794256 cttttgaataccaatggacaattcataagtcatgagaaatctcaattgaataccaacggattttgttgccttaaaaaaaaagtcatgattgtcttgattg 8794355  T
Q  293 aatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||| ||||||||| ||||||||  ||||||||||||||| ||||    
T  8794356 aataccacaagatttgtttagattttataaaagtcttgattgaata 8794401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 5957398 - 5957275
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagtctt-agaaatc 233  Q
    ||||||||||||||||||||| |||||||||||| ||  |||  |||||||||  |  | |||| |||||||  ||||| || ||||||| | |||||||    
T  5957398 ttttaactaaaaagtctcacaaaatccattatacgaaaaaatatattaaaatctatagacttttgaataccaatagacaattcataagtcatgagaaatc 5957299  T
Q  234 ttaattgaataccaacggattttg 257  Q
    ||||||||||||||||||||||||    
T  5957298 ttaattgaataccaacggattttg 5957275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 709235 - 709060
Alignment:
Q  93 acaaaatttcaagagtttgtgtgagattgttggatgagtgtatt----------ttaactaaaaagtctcacacaatccattatacaaatgaatccatta 182  Q
    ||||||| |||||  ||||||||||||||||||||||| |||||          ||||||||||||||||||| ||||||||| |   | |||||||| |    
T  709235 acaaaatctcaaggatttgtgtgagattgttggatgagagtattatttatatttttaactaaaaagtctcacaaaatccattacatccaagaatccatca 709136  T
Q  183 aaatccgtctaattttcaataccacgagacattttataagtc-ttagaaatcttaattgaataccaacggattttg 257  Q
    |||||  |  | |||| |||||||  ||||| || ||||||| | |||||| | ||||||||||||||||||||||    
T  709135 aaatctatagacttttgaataccaatagacaattcataagtcatgagaaatttcaattgaataccaacggattttg 709060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 29865404 - 29865459
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||| ||||||||||||||| ||||||||||||   ||||||||||||||    
T  29865404 aaaatatatatcctgccattgttacagtagaacagaaaagaatttggaagaaacgt 29865459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 31609659 - 31609723
Alignment:
Q  286 ttgattgaatactacaagatttatttagattccataaaagtcttgattcaatatctcaagatttt 350  Q
    |||| |||||||||  ||||||||||| |||| ||||||||||||||| |||| | |||||||||    
T  31609659 ttgactgaatactatgagatttatttatattctataaaagtcttgattgaataccacaagatttt 31609723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 10009605 - 10009652
Alignment:
Q  286 ttgattgaatactacaagatttatttagattccataaaagtcttgatt 333  Q
    |||||||||||| |||||||||||||| |||| |||||| ||||||||    
T  10009605 ttgattgaataccacaagatttatttatattctataaaaatcttgatt 10009652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 338
Target Start/End: Complemental strand, 709038 - 708980
Alignment:
Q  280 attgttttgattgaatactacaagatttatttagattccataaaagtcttgattcaata 338  Q
    ||||| |||||||||||| |||||||||||||| |||  |||||||| |||||| ||||    
T  709038 attgtcttgattgaataccacaagatttatttacattttataaaagttttgattgaata 708980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 31609502 - 31609560
Alignment:
Q  130 gtgtatttt-aactaaaaagtctcacacaatccattatacaaatgaatccattaaaatc 187  Q
    ||||||||| ||||||||||||||||| |||||| |||||||| | | |||||||||||    
T  31609502 gtgtattttcaactaaaaagtctcacaaaatccactatacaaaaggaaccattaaaatc 31609560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 4653421 - 4653368
Alignment:
Q  280 attgttttgattgaatactacaagatttatttagattccataaaagtcttgatt 333  Q
    ||||| || ||||||||| |||||||||||||| |||  |||||||||||||||    
T  4653421 attgtcttaattgaataccacaagatttatttacattttataaaagtcttgatt 4653368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 6476368 - 6476421
Alignment:
Q  15 aatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||| || |||||||||| ||||||||||||   ||||||||||||||    
T  6476368 aatatataacatggcattgttacagtagaacagaaaagaatttggaagaaacgt 6476421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 257
Target Start/End: Complemental strand, 4653508 - 4653444
Alignment:
Q  194 attttcaataccacgagacattttataagtcttagaaa-tcttaattgaataccaacggattttg 257  Q
    ||||| |||||||  ||||| || |||||||||||||| ||| ||||||||| ||||||||||||    
T  4653508 atttttaataccaatagacaattcataagtcttagaaaatctcaattgaatatcaacggattttg 4653444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 11612 - 11732
Alignment:
Q  135 ttttaactaaaaagtctcacacaatccattatacaaatgaatccattaaaatccgtctaattttcaataccacgagacattttataagtctt-agaaatc 233  Q
    |||||||||||||||||| || ||||||||  | ||| |||||||| ||||||  |  | |||| |||||||  | |||||||||||||  | |||||||    
T  11612 ttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatcaattaatttttgaataccaaaatacattttataagttgtgagaaatc 11711  T
Q  234 ttaattgaataccaacggatt 254  Q
    |||||||||||||||||||||    
T  11712 ttaattgaataccaacggatt 11732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 21099 - 21154
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaattttttggaagaaacgt 68  Q
    |||||||||| ||||||||||||||| ||||||||||||   ||||||||||||||    
T  21099 aaaatatatatcctgccattgttacagtagaacagaaaagaatttggaagaaacgt 21154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 34469 - 34507
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaa 51  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  34469 aaaatatataacctgccattgttacagtagaacagaaaa 34507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 81437 - 81475
Alignment:
Q  13 aaaatatataacctgccattgttacaatagaacagaaaa 51  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  81437 aaaatatataacctgccattgttacagtagaacagaaaa 81475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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