View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_high_12 (Length: 436)
Name: NF8241_high_12
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 13657353 - 13656934
Alignment:
| Q |
1 |
aagaacatgaacttagaagaaagaagacatctaaaaatacaattttaagtttggctcgtccgtctttttattttgaagtcataaatatcatctgagtatg |
100 |
Q |
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||||||||||| ||||||||||||||| || | | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
13657353 |
aagaacatgaagttagaagaaagaagatgtccagatatacaattttatgtttggctcgtccgtctttttattttaaagtcataaatatcatctgtgtatg |
13657254 |
T |
|
| Q |
101 |
gggcagagccaacccaaattttattaaaagtaagtgatgcctaaagtaagattcaatacattagccnnnnnnn---gttagaattattgtttgtaaaatt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||| ||||||||||||||||||||||| |
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| T |
13657253 |
gggcagagccaacccaaattttattaaaagtaagtgatgcttaaagtaaaattcaatatatgagccttttttttttgttagaattattgtttgtaaaatc |
13657154 |
T |
|
| Q |
198 |
taatgaaaaataatttttgttggtagatctaaatcagaggctttggtaaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgta |
297 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13657153 |
taatgaaaaataatttctgttggtagatctaaatcagagactttggtgaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgta |
13657054 |
T |
|
| Q |
298 |
ttgatacacaaatgactgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaaaaccatgcatgcttgaacactatca |
397 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13657053 |
ttgatacacaaatgagtgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaataccatgcatgcttgaacactatca |
13656954 |
T |
|
| Q |
398 |
tcttattttggatgaccaat |
417 |
Q |
| |
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||||||||||||| |||||| |
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| T |
13656953 |
tcttattttggattaccaat |
13656934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 13715995 - 13715576
Alignment:
| Q |
1 |
aagaacatgaacttagaagaaagaagacatctaaaaatacaattttaagtttggctcgtccgtctttttattttgaagtcataaatatcatctgagtatg |
100 |
Q |
| |
|
||||||||||| ||||||||||||||| || | | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
13715995 |
aagaacatgaagttagaagaaagaagatgtccagatatacaattttatgtttggctcgtccgtctttttattttaaagtcataaatatcatctgtgtatg |
13715896 |
T |
|
| Q |
101 |
gggcagagccaacccaaattttattaaaagtaagtgatgcctaaagtaagattcaatacattagccnnnnnnn---gttagaattattgtttgtaaaatt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||| ||||||||||||||||||||||| |
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| T |
13715895 |
gggcagagccaacccaaattttattaaaagtaagtgatgcttaaagtaaaattcaatatatgagccttttttttttgttagaattattgtttgtaaaatc |
13715796 |
T |
|
| Q |
198 |
taatgaaaaataatttttgttggtagatctaaatcagaggctttggtaaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgta |
297 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715795 |
taatgaaaaataatttctgttggtagatctaaatcagagactttggtgaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtgta |
13715696 |
T |
|
| Q |
298 |
ttgatacacaaatgactgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaaaaccatgcatgcttgaacactatca |
397 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
13715695 |
ttgatacacaaatgagtgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaataccatgcatgcttgaacactatca |
13715596 |
T |
|
| Q |
398 |
tcttattttggatgaccaat |
417 |
Q |
| |
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||||||||||||| |||||| |
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| T |
13715595 |
tcttattttggattaccaat |
13715576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 26765152 - 26765191
Alignment:
| Q |
191 |
taaaatttaatgaaaaataatttttgttggtagatctaaa |
230 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
26765152 |
taaaatttaatgaaaaataatttttgttggtgggtctaaa |
26765191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 18732352 - 18732314
Alignment:
| Q |
184 |
ttgtttgtaaaatttaatgaaaaataat-ttttgttggt |
221 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
18732352 |
ttgtttgtaaaatttaatgaaaaataatgttttgttggt |
18732314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 41872428 - 41872461
Alignment:
| Q |
184 |
ttgtttgtaaaatttaatgaaaaataatttttgt |
217 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
41872428 |
ttgtttataaaatttaatgaaaaataatttttgt |
41872461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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