View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8241_high_16 (Length: 398)

Name: NF8241_high_16
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8241_high_16
NF8241_high_16
[»] chr5 (12 HSPs)
chr5 (71-389)||(17032159-17032488)
chr5 (88-380)||(17042705-17043007)
chr5 (78-380)||(17048571-17048882)
chr5 (79-336)||(17036930-17037197)
chr5 (65-380)||(16994819-16995133)
chr5 (124-380)||(17018054-17018313)
chr5 (296-377)||(16988137-16988218)
chr5 (301-378)||(17017288-17017365)
chr5 (170-235)||(17002977-17003043)
chr5 (118-153)||(17040110-17040145)
chr5 (171-235)||(17025378-17025443)
chr5 (20-68)||(17037268-17037316)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 71 - 389
Target Start/End: Complemental strand, 17032488 - 17032159
Alignment:
Q  71 actctgcttttccttggaagaaaattaactgtatttttcttcataac----atttacttgatttttacaattcatacatgacaggaccatcaaaagttga 166  Q
    |||||||||||| |||||| | ||| ||| ||| |||| |||||||     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17032488 actctgcttttctttggaatataatcaaccgtaattttattcataattaatatttacttgatttttacaattcatacatgacaggaccatcaaaagttga 17032389  T
Q  167 ggagggaccttttgtgaaattttgaagaatttaatcactttaccgttatggacatcacaagaagaatatatttgatttcgtagaatgatattcccaattc 266  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17032388 ggagggaccttttgtaaaattttgaagaatttaatcactttaccgttatggacatcacaagaagaatatatttggtttcgtagaatgatattcccaattc 17032289  T
Q  267 ctatggccaaacatcctgactatgttcat-------tgatagcaaactaactttataaatggccacacaaattttcacatatatttgtactttgaacacg 359  Q
    |||||||||||||||||||||||||||||       |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17032288 ctatggccaaacatcctgactatgttcattgttcaatgatagtagactaactttataaatggccacacaaattttcacatatatttgtactttgaacacg 17032189  T
Q  360 atatctttactatatatagaataatatagc 389  Q
    ||||||||||||||||||||| ||||||||    
T  17032188 atatctttactatatatagaacaatatagc 17032159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 88 - 380
Target Start/End: Complemental strand, 17043007 - 17042705
Alignment:
Q  88 aagaaaattaactgtatttttcttcataacatttacttgatttttacaattcatacatgacaggaccatcaaaagttgaggagggaccttttgtgaaatt 187  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||| | |||    
T  17043007 aagaaaattaactgtatttttcttaataacatttacttgatttttatgattcatacatgacaggaccatcaaaagttgaggaggtaccatttgttagatt 17042908  T
Q  188 ttgaagaatttaatcactttaccgttatggacatcacaagaagaata---tatttgatttcgtagaatgatattcccaattcctatggccaaacatcctg 284  Q
    |||||||||| ||||||||||| | || ||| |||||||||||||||   ||||||||||| || ||||||||||||||||||||| |||||||||||||    
T  17042907 ttgaagaattgaatcactttactgctacggatatcacaagaagaatatattatttgatttcatataatgatattcccaattcctattgccaaacatcctg 17042808  T
Q  285 actatgttcat-------tgatagcaaactaactttataaatggccacacaaattttcacatatatttgtactttgaacacgatatctttactatatata 377  Q
    |||||||||||       |||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||| | |||||||||||    
T  17042807 actatgttcatttttcaatgatagtagactaactttataaatggccacacaaattttcacgtatctttgtactttgaacccaatatttgtactatatata 17042708  T
Q  378 gaa 380  Q
    |||    
T  17042707 gaa 17042705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 78 - 380
Target Start/End: Complemental strand, 17048882 - 17048571
Alignment:
Q  78 ttttccttggaagaaaattaactgtatttttcttc--ataacatttacttgatttttacaattcatacatgacaggaccatcaaaagttgaggagggacc 175  Q
    |||||||||||| |||||||||  | ||||||||   ||||||||||||||| ||||||||||||| |||| | |||||||||||||||||| ||| |||    
T  17048882 ttttccttggaataaaattaaccttgtttttctttttataacatttacttgaattttacaattcatgcatggctggaccatcaaaagttgagaaggtacc 17048783  T
Q  176 ttttgtgaaattttgaagaatttaatcactttaccgttatggacatcacaagaagaatatatttgatttcgtagaatgatattcccaattcctatggcca 275  Q
    |||||| | |||||||||| || ||||||||||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  17048782 ttttgttagattttgaagatttgaatcactttaccgctacggacatcacaagaagaatatatttgatttcatataatgatattcccaattcctattgcca 17048683  T
Q  276 aacatcctgactatgttcat-------tgatagcaaactaactttataaatggccacacaaattttcacatatatttgtactttgaacacgatatcttta 368  Q
    ||||||||||||||||||||       |||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |||| | ||    
T  17048682 aacatcctgactatgttcattgttcaatgatagtagactaactttataaatggccacacaaattttcacgtatctttgtactttgaacccaatatttgta 17048583  T
Q  369 ctatatatagaa 380  Q
    ||||||||||||    
T  17048582 ctatatatagaa 17048571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 79 - 336
Target Start/End: Complemental strand, 17037197 - 17036930
Alignment:
Q  79 tttccttggaagaaaattaactgtatttttcttcataacatttacttgatttttacaattcatacatgacaggaccatcaaaagttgaggagggaccttt 178  Q
    ||||| || |||||||||||||||||||||||| ||| |||||||||||||||||  | ||||||||||||||||||||||||||| |||||| ||||||    
T  17037197 tttccatgaaagaaaattaactgtatttttcttaatagcatttacttgatttttatgagtcatacatgacaggaccatcaaaagtttaggaggtaccttt 17037098  T
Q  179 tgtgaaattttgaagaatttaatcactttaccgttatggacatcacaagaagaata---tatttgatttcgtagaatgatattcccaattcctatggcca 275  Q
    |||   |||||||||| || ||||||||||||  ||||||||||||||||||||||   ||||||||||| || ||||||||||||||||||||| ||||    
T  17037097 tgttggattttgaagatttgaatcactttaccactatggacatcacaagaagaatatattatttgatttcatataatgatattcccaattcctattgcca 17036998  T
Q  276 aacatcctgactatgttcat-------tgatagcaaactaactttataaatggccacacaaattttca 336  Q
    ||||||||||||||||||||       |||||||  |||||||||||||||||||||| |||||||||    
T  17036997 aacatcctgactatgttcatttttcaatgatagctgactaactttataaatggccacaaaaattttca 17036930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 65 - 380
Target Start/End: Complemental strand, 16995133 - 16994819
Alignment:
Q  65 attataactctgcttttccttggaagaaaattaactgtatttttcttcataacatttacttgatttttacaattcatacatgacaggaccatcaaaagtt 164  Q
    ||||| ||||||| |||| |||||| ||||| ||||||||||||||| |||||||||  |  |||||| |||||| | ||||||||||||||||||||||    
T  16995133 attatgactctgcatttctttggaataaaatgaactgtatttttctt-ataacatttgat--attttt-caattcttgcatgacaggaccatcaaaagtt 16995038  T
Q  165 gaggagggaccttttgtgaaattttgaagaatttaatcactttaccgttatggacatcacaagaagaatatatttgatttcgtagaatgatattcccaat 264  Q
     || ||| ||||||||| | |||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||  | ||| ||| | |||||    
T  16995037 tag-aggtaccttttgttagattttgaagatttgaatcactttaacgttacggacatcacaagaagaatatatttgatttc--ataataata-taccaat 16994942  T
Q  265 tcctatggccaaacatcctgactatgttcat-------tgatagcaaactaactttataaatggccacacaaattttcacatatatttgtactttgaaca 357  Q
    |||| | ||||||||||||||||||||||||       |||||| | ||||||||||||||||||||||||||||||||  ||| ||||| ||||||||     
T  16994941 tccttttgccaaacatcctgactatgttcattgttcaatgatagtagactaactttataaatggccacacaaattttcaagtatctttgtgctttgaacc 16994842  T
Q  358 cgatatctttactatatatagaa 380  Q
    | |||| | || |||||||||||    
T  16994841 caatatttgtaatatatatagaa 16994819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 124 - 380
Target Start/End: Complemental strand, 17018313 - 17018054
Alignment:
Q  124 ttgatttttacaattcatacatgacaggaccatcaaaagttgaggagggaccttttgtgaaattttgaagaatttaatcactttaccgttatggacatca 223  Q
    |||||||||||| ||| | |||||||||||||||||||||| || ||| ||||||||| | |||||||||| || |||||||||| ||||| ||||||||    
T  17018313 ttgatttttacacttcttgcatgacaggaccatcaaaagtttag-aggtaccttttgttagattttgaagatttgaatcactttaacgttacggacatca 17018215  T
Q  224 caagaagaatatatttgatttcgtagaatgatattcccaattcctatggccaaacatcctgactatgttcat-------tgatagcaaactaactttata 316  Q
    ||||||||||||||||||||||  | ||| ||| | ||||||||| | ||||||||||||||||||||||||       |||||| | ||||||||||||    
T  17018214 caagaagaatatatttgatttc--ataataata-taccaattccttttgccaaacatcctgactatgttcattgttcaatgatagtagactaactttata 17018118  T
Q  317 aatggccacacaaattttcacatatatttgtactttgaacacgatatctttactatatatagaa 380  Q
    ||||||||||||||||||||  ||| ||||| |||||||| | |||| | || |||||||||||    
T  17018117 aatggccacacaaattttcaagtatctttgtgctttgaacccaatatttgtaatatatatagaa 17018054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 16988218 - 16988137
Alignment:
Q  296 tgatagcaaactaactttataaatggccacacaaattttcacatatatttgtactttgaacacgatatctttactatatata 377  Q
    |||| |||||| ||||||||| |||||||||||||||| ||| |||||||||||||||||||| |||| | |||||||||||    
T  16988218 tgattgcaaacaaactttatacatggccacacaaatttacacgtatatttgtactttgaacacaatatatgtactatatata 16988137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 17017365 - 17017288
Alignment:
Q  301 gcaaactaactttataaatggccacacaaattttcacatatatttgtactttgaacacgatatctttactatatatag 378  Q
    |||||| ||||||||| | | |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||    
T  17017365 gcaaacaaactttatacaagaccacacaaattttcacgtatatttgtactttgaacacaatatctgtactatatatag 17017288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 17003043 - 17002977
Alignment:
Q  170 gggaccttttgtgaaattttgaagaatttaatcactttaccgttat-ggacatcacaagaagaatat 235  Q
    |||||||||| | | |||||||| | ||||| |||||||||||||| ||||||||||||||||||||    
T  17003043 gggaccttttcttagattttgaaaattttaagcactttaccgttatgggacatcacaagaagaatat 17002977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 17040145 - 17040110
Alignment:
Q  118 atttacttgatttttacaattcatacatgacaggac 153  Q
    |||||||||| |||||||||||||||||||||||||    
T  17040145 atttacttgaattttacaattcatacatgacaggac 17040110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 17025443 - 17025378
Alignment:
Q  171 ggaccttttgtgaaattttgaagaatttaatcactttaccgttatgg-acatcacaagaagaatat 235  Q
    ||||||||| | | |||||||| | ||||| |||||||| ||||||| ||||||||||||||||||    
T  17025443 ggaccttttcttagattttgaaaattttaagcactttacagttatgggacatcacaagaagaatat 17025378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 17037316 - 17037268
Alignment:
Q  20 gtatctaacattgataggtaaataacttcattgataatatgtaaaatta 68  Q
    |||||||||||||| ||  ||||||||||||| ||| ||||||||||||    
T  17037316 gtatctaacattgaaagaaaaataacttcattaatattatgtaaaatta 17037268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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