View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8241_high_21 (Length: 375)
Name: NF8241_high_21
Description: NF8241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8241_high_21 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 16950570 - 16950919
Alignment:
| Q |
19 |
aaactcaaatattttagctcttgaatctaacttctaactaccttactgcaacatggtagatgtttaattaacatgttgagctttgaaataaaggagtgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16950570 |
aaactcaaatattttagctcttgaatctaacttctaactaccttactgcaacatggtagatgtttaattaacatgttgagctttgaaataaaggagtgaa |
16950669 |
T |
|
| Q |
119 |
atattttaggaggctannnnnnngataaagaagtctgcaagctgagaatttgagcttgtaaggagcaattagaaaattccttgttgcatcttttctcaaa |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16950670 |
atattttaggaggctatttttttgataaagaagtctgcaagctgagaatttgagcttgtaaggagcaattagaaaattccttgttgcatcttttctcaaa |
16950769 |
T |
|
| Q |
219 |
caaaatgagagtttattatttccaagnnnnnnnnnnnnngaatcggcaaaattttattgaaccgaaaactcatgcaagacgcaaagagtcggtataaaca |
318 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16950770 |
caaaatgagagtttattatttccaagtttttgtttttttgaatcggcaaaattttattgaaccgaaaactcatgcaagacgcaaagagtcggtataaaca |
16950869 |
T |
|
| Q |
319 |
acaatacaaggatgccgcctataggcgtaacaaccaacctccaacaccaa |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16950870 |
acaatacaaggatgccgcctataggcgtaacaaccaacctccaacaccaa |
16950919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 17021235 - 17021584
Alignment:
| Q |
19 |
aaactcaaatattttagctcttgaatctaacttctaactaccttactgcaacatggtagatgtttaattaacatgttgagctttgaaataaaggagtgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17021235 |
aaactcaaatattttagctcttgaatctaacttctaactaccttactgcaacatggtagatgtttaattaacatgttgagctttgaaataaaggagtgaa |
17021334 |
T |
|
| Q |
119 |
atattttaggaggctannnnnnngataaagaagtctgcaagctgagaatttgagcttgtaaggagcaattagaaaattccttgttgcatcttttctcaaa |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17021335 |
atattttaggaggctatttttttgataaagaagtctgcaagctgagaatttgagcttgtaaggagcaattagaaaattccttgttgcatcttttctcaaa |
17021434 |
T |
|
| Q |
219 |
caaaatgagagtttattatttccaagnnnnnnnnnnnnngaatcggcaaaattttattgaaccgaaaactcatgcaagacgcaaagagtcggtataaaca |
318 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17021435 |
caaaatgagagtttattatttccaagtttttgtttttttgaatcggcaaaattttattgaaccgaaaactcatgcaagacgcaaagagtcggtataaaca |
17021534 |
T |
|
| Q |
319 |
acaatacaaggatgccgcctataggcgtaacaaccaacctccaacaccaa |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17021535 |
acaatacaaggatgccgcctataggcgtaacaaccaacctccaacaccaa |
17021584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 258 - 368
Target Start/End: Original strand, 42773233 - 42773343
Alignment:
| Q |
258 |
gaatcggcaaaattttattgaaccgaaaactcatgcaagacgcaaagagtcggtataaacaacaatacaaggatgccgcctataggcgtaacaaccaacc |
357 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42773233 |
gaatcggcaaaattttattgaaccgaaaactcatgcaagacgcaaagagtcggtataaacaacaatccaaggatgccgcctataggcgtaacaaccaacc |
42773332 |
T |
|
| Q |
358 |
tccaacaccaa |
368 |
Q |
| |
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||||||||||| |
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| T |
42773333 |
tccaacaccaa |
42773343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 258 - 368
Target Start/End: Original strand, 31328415 - 31328525
Alignment:
| Q |
258 |
gaatcggcaaaattttattgaaccgaaaactcatgcaagacgcaaagagtcggtataaacaacaatacaaggatgccgcctataggcgtaacaaccaacc |
357 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31328415 |
gaatcagcaaaattttattgaaacgaaaactcatgcaagacgcaaagagtcggtataaacaacaatacaaggatgctgcctataggcgtaacaaccaacc |
31328514 |
T |
|
| Q |
358 |
tccaacaccaa |
368 |
Q |
| |
|
||||||||||| |
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| T |
31328515 |
tccaacaccaa |
31328525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 258 - 368
Target Start/End: Original strand, 53747524 - 53747634
Alignment:
| Q |
258 |
gaatcggcaaaattttattgaaccgaaaactcatgcaagacgcaaagagtcggtataaacaacaatacaaggatgccgcctataggcgtaacaaccaacc |
357 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
53747524 |
gaataggcaaaattttattgaaccgaaaactcatgtaagacgcaaagagtcggtataatcaacaatacaaggatgccgcctataggcgtaacatccaacc |
53747623 |
T |
|
| Q |
358 |
tccaacaccaa |
368 |
Q |
| |
|
||||||||||| |
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|
| T |
53747624 |
tccaacaccaa |
53747634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 14184909 - 14185011
Alignment:
| Q |
266 |
aaaattttattgaaccgaaaactcatgcaagacgcaaagagtcggtataaacaacaatacaaggatgccgcctataggcgtaacaaccaacctccaacac |
365 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
14184909 |
aaaattttataaaaccaaaaactcatgcaagacgcaaagagttggtataaacaacaatacaaggataccgcctataggcgtaacatccaacctccaacac |
14185008 |
T |
|
| Q |
366 |
caa |
368 |
Q |
| |
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||| |
|
|
| T |
14185009 |
caa |
14185011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 28107 - 28063
Alignment:
| Q |
86 |
ttaacatgttgagctttgaaataaaggagtgaaatattttaggag |
130 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||| ||||||||| |
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| T |
28107 |
ttaacatgttgagcttcgaaataaaagagtgaaattttttaggag |
28063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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